diff --git a/.coveragerc b/.coveragerc new file mode 100644 index 0000000..3cb3f9a --- /dev/null +++ b/.coveragerc @@ -0,0 +1,28 @@ +# .coveragerc to control coverage.py +[run] +branch = True +source = pyrty +# omit = bad_file.py + +[paths] +source = + src/ + */site-packages/ + +[report] +# Regexes for lines to exclude from consideration +exclude_lines = + # Have to re-enable the standard pragma + pragma: no cover + + # Don't complain about missing debug-only code: + def __repr__ + if self\.debug + + # Don't complain if tests don't hit defensive assertion code: + raise AssertionError + raise NotImplementedError + + # Don't complain if non-runnable code isn't run: + if 0: + if __name__ == .__main__.: diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..e9e1e9b --- /dev/null +++ b/.gitignore @@ -0,0 +1,54 @@ +# Temporary and binary files +*~ +*.py[cod] +*.so +*.cfg +!.isort.cfg +!setup.cfg +*.orig +*.log +*.pot +__pycache__/* +.cache/* +.*.swp +*/.ipynb_checkpoints/* +.DS_Store + +# Project files +.ropeproject +.project +.pydevproject +.settings +.idea +.vscode +tags + +# Package files +*.egg +*.eggs/ +.installed.cfg +*.egg-info + +# Unittest and coverage +htmlcov/* +.coverage +.coverage.* +.tox +junit*.xml +coverage.xml +.pytest_cache/ + +# Build and docs folder/files +build/* +dist/* +sdist/* +docs/api/* +docs/_rst/* +docs/_build/* +cover/* +MANIFEST + +# Per-project virtualenvs +.venv*/ +.conda*/ +.python-version diff --git a/.readthedocs.yml b/.readthedocs.yml new file mode 100644 index 0000000..21b0814 --- /dev/null +++ b/.readthedocs.yml @@ -0,0 +1,23 @@ +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +# Build documentation in the docs/ directory with Sphinx +sphinx: + configuration: docs/conf.py + +# Build documentation with MkDocs +#mkdocs: +# configuration: mkdocs.yml + +# Optionally build your docs in additional formats such as PDF +formats: + - pdf + +python: + version: 3.8 + install: + - requirements: docs/requirements.txt + - {path: ., method: pip} diff --git a/AUTHORS.rst b/AUTHORS.rst new file mode 100644 index 0000000..dc57edf --- /dev/null +++ b/AUTHORS.rst @@ -0,0 +1,5 @@ +============ +Contributors +============ + +* t-silvers diff --git a/CHANGELOG.rst b/CHANGELOG.rst new file mode 100644 index 0000000..226e6f5 --- /dev/null +++ b/CHANGELOG.rst @@ -0,0 +1,10 @@ +========= +Changelog +========= + +Version 0.1 +=========== + +- Feature A added +- FIX: nasty bug #1729 fixed +- add your changes here! diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst new file mode 100644 index 0000000..eaa34aa --- /dev/null +++ b/CONTRIBUTING.rst @@ -0,0 +1,353 @@ +.. todo:: THIS IS SUPPOSED TO BE AN EXAMPLE. MODIFY IT ACCORDING TO YOUR NEEDS! + + The document assumes you are using a source repository service that promotes a + contribution model similar to `GitHub's fork and pull request workflow`_. + While this is true for the majority of services (like GitHub, GitLab, + BitBucket), it might not be the case for private repositories (e.g., when + using Gerrit). + + Also notice that the code examples might refer to GitHub URLs or the text + might use GitHub specific terminology (e.g., *Pull Request* instead of *Merge + Request*). + + Please make sure to check the document having these assumptions in mind + and update things accordingly. + +.. todo:: Provide the correct links/replacements at the bottom of the document. + +.. todo:: You might want to have a look on `PyScaffold's contributor's guide`_, + + especially if your project is open source. The text should be very similar to + this template, but there are a few extra contents that you might decide to + also include, like mentioning labels of your issue tracker or automated + releases. + + +============ +Contributing +============ + +Welcome to ``pyrty`` contributor's guide. + +This document focuses on getting any potential contributor familiarized +with the development processes, but `other kinds of contributions`_ are also +appreciated. + +If you are new to using git_ or have never collaborated in a project previously, +please have a look at `contribution-guide.org`_. Other resources are also +listed in the excellent `guide created by FreeCodeCamp`_ [#contrib1]_. + +Please notice, all users and contributors are expected to be **open, +considerate, reasonable, and respectful**. When in doubt, `Python Software +Foundation's Code of Conduct`_ is a good reference in terms of behavior +guidelines. + + +Issue Reports +============= + +If you experience bugs or general issues with ``pyrty``, please have a look +on the `issue tracker`_. If you don't see anything useful there, please feel +free to fire an issue report. + +.. tip:: + Please don't forget to include the closed issues in your search. + Sometimes a solution was already reported, and the problem is considered + **solved**. + +New issue reports should include information about your programming environment +(e.g., operating system, Python version) and steps to reproduce the problem. +Please try also to simplify the reproduction steps to a very minimal example +that still illustrates the problem you are facing. By removing other factors, +you help us to identify the root cause of the issue. + + +Documentation Improvements +========================== + +You can help improve ``pyrty`` docs by making them more readable and coherent, or +by adding missing information and correcting mistakes. + +``pyrty`` documentation uses Sphinx_ as its main documentation compiler. +This means that the docs are kept in the same repository as the project code, and +that any documentation update is done in the same way was a code contribution. + +.. todo:: Don't forget to mention which markup language you are using. + + e.g., reStructuredText_ or CommonMark_ with MyST_ extensions. + +.. todo:: If your project is hosted on GitHub, you can also mention the following tip: + + .. tip:: + Please notice that the `GitHub web interface`_ provides a quick way of + propose changes in ``pyrty``'s files. While this mechanism can + be tricky for normal code contributions, it works perfectly fine for + contributing to the docs, and can be quite handy. + + If you are interested in trying this method out, please navigate to + the ``docs`` folder in the source repository_, find which file you + would like to propose changes and click in the little pencil icon at the + top, to open `GitHub's code editor`_. Once you finish editing the file, + please write a message in the form at the bottom of the page describing + which changes have you made and what are the motivations behind them and + submit your proposal. + +When working on documentation changes in your local machine, you can +compile them using |tox|_:: + + tox -e docs + +and use Python's built-in web server for a preview in your web browser +(``http://localhost:8000``):: + + python3 -m http.server --directory 'docs/_build/html' + + +Code Contributions +================== + +.. todo:: Please include a reference or explanation about the internals of the project. + + An architecture description, design principles or at least a summary of the + main concepts will make it easy for potential contributors to get started + quickly. + +Submit an issue +--------------- + +Before you work on any non-trivial code contribution it's best to first create +a report in the `issue tracker`_ to start a discussion on the subject. +This often provides additional considerations and avoids unnecessary work. + +Create an environment +--------------------- + +Before you start coding, we recommend creating an isolated `virtual +environment`_ to avoid any problems with your installed Python packages. +This can easily be done via either |virtualenv|_:: + + virtualenv + source /bin/activate + +or Miniconda_:: + + conda create -n pyrty python=3 six virtualenv pytest pytest-cov + conda activate pyrty + +Clone the repository +-------------------- + +#. Create an user account on |the repository service| if you do not already have one. +#. Fork the project repository_: click on the *Fork* button near the top of the + page. This creates a copy of the code under your account on |the repository service|. +#. Clone this copy to your local disk:: + + git clone git@github.com:YourLogin/pyrty.git + cd pyrty + +#. You should run:: + + pip install -U pip setuptools -e . + + to be able to import the package under development in the Python REPL. + + .. todo:: if you are not using pre-commit, please remove the following item: + +#. Install |pre-commit|_:: + + pip install pre-commit + pre-commit install + + ``pyrty`` comes with a lot of hooks configured to automatically help the + developer to check the code being written. + +Implement your changes +---------------------- + +#. Create a branch to hold your changes:: + + git checkout -b my-feature + + and start making changes. Never work on the main branch! + +#. Start your work on this branch. Don't forget to add docstrings_ to new + functions, modules and classes, especially if they are part of public APIs. + +#. Add yourself to the list of contributors in ``AUTHORS.rst``. + +#. When you’re done editing, do:: + + git add + git commit + + to record your changes in git_. + + .. todo:: if you are not using pre-commit, please remove the following item: + + Please make sure to see the validation messages from |pre-commit|_ and fix + any eventual issues. + This should automatically use flake8_/black_ to check/fix the code style + in a way that is compatible with the project. + + .. important:: Don't forget to add unit tests and documentation in case your + contribution adds an additional feature and is not just a bugfix. + + Moreover, writing a `descriptive commit message`_ is highly recommended. + In case of doubt, you can check the commit history with:: + + git log --graph --decorate --pretty=oneline --abbrev-commit --all + + to look for recurring communication patterns. + +#. Please check that your changes don't break any unit tests with:: + + tox + + (after having installed |tox|_ with ``pip install tox`` or ``pipx``). + + You can also use |tox|_ to run several other pre-configured tasks in the + repository. Try ``tox -av`` to see a list of the available checks. + +Submit your contribution +------------------------ + +#. If everything works fine, push your local branch to |the repository service| with:: + + git push -u origin my-feature + +#. Go to the web page of your fork and click |contribute button| + to send your changes for review. + + .. todo:: if you are using GitHub, you can uncomment the following paragraph + + Find more detailed information in `creating a PR`_. You might also want to open + the PR as a draft first and mark it as ready for review after the feedbacks + from the continuous integration (CI) system or any required fixes. + + +Troubleshooting +--------------- + +The following tips can be used when facing problems to build or test the +package: + +#. Make sure to fetch all the tags from the upstream repository_. + The command ``git describe --abbrev=0 --tags`` should return the version you + are expecting. If you are trying to run CI scripts in a fork repository, + make sure to push all the tags. + You can also try to remove all the egg files or the complete egg folder, i.e., + ``.eggs``, as well as the ``*.egg-info`` folders in the ``src`` folder or + potentially in the root of your project. + +#. Sometimes |tox|_ misses out when new dependencies are added, especially to + ``setup.cfg`` and ``docs/requirements.txt``. If you find any problems with + missing dependencies when running a command with |tox|_, try to recreate the + ``tox`` environment using the ``-r`` flag. For example, instead of:: + + tox -e docs + + Try running:: + + tox -r -e docs + +#. Make sure to have a reliable |tox|_ installation that uses the correct + Python version (e.g., 3.7+). When in doubt you can run:: + + tox --version + # OR + which tox + + If you have trouble and are seeing weird errors upon running |tox|_, you can + also try to create a dedicated `virtual environment`_ with a |tox|_ binary + freshly installed. For example:: + + virtualenv .venv + source .venv/bin/activate + .venv/bin/pip install tox + .venv/bin/tox -e all + +#. `Pytest can drop you`_ in an interactive session in the case an error occurs. + In order to do that you need to pass a ``--pdb`` option (for example by + running ``tox -- -k --pdb``). + You can also setup breakpoints manually instead of using the ``--pdb`` option. + + +Maintainer tasks +================ + +Releases +-------- + +.. todo:: This section assumes you are using PyPI to publicly release your package. + + If instead you are using a different/private package index, please update + the instructions accordingly. + +If you are part of the group of maintainers and have correct user permissions +on PyPI_, the following steps can be used to release a new version for +``pyrty``: + +#. Make sure all unit tests are successful. +#. Tag the current commit on the main branch with a release tag, e.g., ``v1.2.3``. +#. Push the new tag to the upstream repository_, e.g., ``git push upstream v1.2.3`` +#. Clean up the ``dist`` and ``build`` folders with ``tox -e clean`` + (or ``rm -rf dist build``) + to avoid confusion with old builds and Sphinx docs. +#. Run ``tox -e build`` and check that the files in ``dist`` have + the correct version (no ``.dirty`` or git_ hash) according to the git_ tag. + Also check the sizes of the distributions, if they are too big (e.g., > + 500KB), unwanted clutter may have been accidentally included. +#. Run ``tox -e publish -- --repository pypi`` and check that everything was + uploaded to PyPI_ correctly. + + + +.. [#contrib1] Even though, these resources focus on open source projects and + communities, the general ideas behind collaborating with other developers + to collectively create software are general and can be applied to all sorts + of environments, including private companies and proprietary code bases. + + +.. <-- strart --> +.. todo:: Please review and change the following definitions: + +.. |the repository service| replace:: GitHub +.. |contribute button| replace:: "Create pull request" + +.. _repository: https://github.com//pyrty +.. _issue tracker: https://github.com//pyrty/issues +.. <-- end --> + + +.. |virtualenv| replace:: ``virtualenv`` +.. |pre-commit| replace:: ``pre-commit`` +.. |tox| replace:: ``tox`` + + +.. _black: https://pypi.org/project/black/ +.. _CommonMark: https://commonmark.org/ +.. _contribution-guide.org: https://www.contribution-guide.org/ +.. _creating a PR: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/creating-a-pull-request +.. _descriptive commit message: https://chris.beams.io/posts/git-commit +.. _docstrings: https://www.sphinx-doc.org/en/master/usage/extensions/napoleon.html +.. _first-contributions tutorial: https://github.com/firstcontributions/first-contributions +.. _flake8: https://flake8.pycqa.org/en/stable/ +.. _git: https://git-scm.com +.. _GitHub's fork and pull request workflow: https://guides.github.com/activities/forking/ +.. _guide created by FreeCodeCamp: https://github.com/FreeCodeCamp/how-to-contribute-to-open-source +.. _Miniconda: https://docs.conda.io/en/latest/miniconda.html +.. _MyST: https://myst-parser.readthedocs.io/en/latest/syntax/syntax.html +.. _other kinds of contributions: https://opensource.guide/how-to-contribute +.. _pre-commit: https://pre-commit.com/ +.. _PyPI: https://pypi.org/ +.. _PyScaffold's contributor's guide: https://pyscaffold.org/en/stable/contributing.html +.. _Pytest can drop you: https://docs.pytest.org/en/stable/how-to/failures.html#using-python-library-pdb-with-pytest +.. _Python Software Foundation's Code of Conduct: https://www.python.org/psf/conduct/ +.. _reStructuredText: https://www.sphinx-doc.org/en/master/usage/restructuredtext/ +.. _Sphinx: https://www.sphinx-doc.org/en/master/ +.. _tox: https://tox.wiki/en/stable/ +.. _virtual environment: https://realpython.com/python-virtual-environments-a-primer/ +.. _virtualenv: https://virtualenv.pypa.io/en/stable/ + +.. _GitHub web interface: https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files +.. _GitHub's code editor: https://docs.github.com/en/repositories/working-with-files/managing-files/editing-files diff --git a/LICENSE.txt b/LICENSE.txt new file mode 100644 index 0000000..1f855bb --- /dev/null +++ b/LICENSE.txt @@ -0,0 +1,21 @@ +The MIT License (MIT) + +Copyright (c) 2023 t-silvers + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/README.rst b/README.rst new file mode 100644 index 0000000..8df0379 --- /dev/null +++ b/README.rst @@ -0,0 +1,49 @@ +.. These are examples of badges you might want to add to your README: + please update the URLs accordingly + + .. image:: https://api.cirrus-ci.com/github//pyrty.svg?branch=main + :alt: Built Status + :target: https://cirrus-ci.com/github//pyrty + .. image:: https://readthedocs.org/projects/pyrty/badge/?version=latest + :alt: ReadTheDocs + :target: https://pyrty.readthedocs.io/en/stable/ + .. image:: https://img.shields.io/coveralls/github//pyrty/main.svg + :alt: Coveralls + :target: https://coveralls.io/r//pyrty + .. image:: https://img.shields.io/pypi/v/pyrty.svg + :alt: PyPI-Server + :target: https://pypi.org/project/pyrty/ + .. image:: https://img.shields.io/conda/vn/conda-forge/pyrty.svg + :alt: Conda-Forge + :target: https://anaconda.org/conda-forge/pyrty + .. image:: https://pepy.tech/badge/pyrty/month + :alt: Monthly Downloads + :target: https://pepy.tech/project/pyrty + .. image:: https://img.shields.io/twitter/url/http/shields.io.svg?style=social&label=Twitter + :alt: Twitter + :target: https://twitter.com/pyrty + +.. image:: https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold + :alt: Project generated with PyScaffold + :target: https://pyscaffold.org/ + +| + +===== +pyrty +===== + + + Add a short description here! + + +A longer description of your project goes here... + + +.. _pyscaffold-notes: + +Note +==== + +This project has been set up using PyScaffold 4.3.1. For details and usage +information on PyScaffold see https://pyscaffold.org/. diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000..31655dd --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,29 @@ +# Makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = . +BUILDDIR = _build +AUTODOCDIR = api + +# User-friendly check for sphinx-build +ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $?), 1) +$(error "The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from https://sphinx-doc.org/") +endif + +.PHONY: help clean Makefile + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +clean: + rm -rf $(BUILDDIR)/* $(AUTODOCDIR) + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/_static/.gitignore b/docs/_static/.gitignore new file mode 100644 index 0000000..3c96363 --- /dev/null +++ b/docs/_static/.gitignore @@ -0,0 +1 @@ +# Empty directory diff --git a/docs/authors.rst b/docs/authors.rst new file mode 100644 index 0000000..cd8e091 --- /dev/null +++ b/docs/authors.rst @@ -0,0 +1,2 @@ +.. _authors: +.. include:: ../AUTHORS.rst diff --git a/docs/changelog.rst b/docs/changelog.rst new file mode 100644 index 0000000..871950d --- /dev/null +++ b/docs/changelog.rst @@ -0,0 +1,2 @@ +.. _changes: +.. include:: ../CHANGELOG.rst diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 0000000..72f7f1f --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,286 @@ +# This file is execfile()d with the current directory set to its containing dir. +# +# This file only contains a selection of the most common options. For a full +# list see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html +# +# All configuration values have a default; values that are commented out +# serve to show the default. + +import os +import sys +import shutil + +# -- Path setup -------------------------------------------------------------- + +__location__ = os.path.dirname(__file__) + +# If extensions (or modules to document with autodoc) are in another directory, +# add these directories to sys.path here. If the directory is relative to the +# documentation root, use os.path.abspath to make it absolute, like shown here. +sys.path.insert(0, os.path.join(__location__, "../src")) + +# -- Run sphinx-apidoc ------------------------------------------------------- +# This hack is necessary since RTD does not issue `sphinx-apidoc` before running +# `sphinx-build -b html . _build/html`. See Issue: +# https://github.com/readthedocs/readthedocs.org/issues/1139 +# DON'T FORGET: Check the box "Install your project inside a virtualenv using +# setup.py install" in the RTD Advanced Settings. +# Additionally it helps us to avoid running apidoc manually + +try: # for Sphinx >= 1.7 + from sphinx.ext import apidoc +except ImportError: + from sphinx import apidoc + +output_dir = os.path.join(__location__, "api") +module_dir = os.path.join(__location__, "../src/pyrty") +try: + shutil.rmtree(output_dir) +except FileNotFoundError: + pass + +try: + import sphinx + + cmd_line = f"sphinx-apidoc --implicit-namespaces -f -o {output_dir} {module_dir}" + + args = cmd_line.split(" ") + if tuple(sphinx.__version__.split(".")) >= ("1", "7"): + # This is a rudimentary parse_version to avoid external dependencies + args = args[1:] + + apidoc.main(args) +except Exception as e: + print("Running `sphinx-apidoc` failed!\n{}".format(e)) + +# -- General configuration --------------------------------------------------- + +# If your documentation needs a minimal Sphinx version, state it here. +# needs_sphinx = '1.0' + +# Add any Sphinx extension module names here, as strings. They can be extensions +# coming with Sphinx (named 'sphinx.ext.*') or your custom ones. +extensions = [ + "sphinx.ext.autodoc", + "sphinx.ext.intersphinx", + "sphinx.ext.todo", + "sphinx.ext.autosummary", + "sphinx.ext.viewcode", + "sphinx.ext.coverage", + "sphinx.ext.doctest", + "sphinx.ext.ifconfig", + "sphinx.ext.mathjax", + "sphinx.ext.napoleon", +] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# The suffix of source filenames. +source_suffix = ".rst" + +# The encoding of source files. +# source_encoding = 'utf-8-sig' + +# The master toctree document. +master_doc = "index" + +# General information about the project. +project = "pyrty" +copyright = "2023, t-silvers" + +# The version info for the project you're documenting, acts as replacement for +# |version| and |release|, also used in various other places throughout the +# built documents. +# +# version: The short X.Y version. +# release: The full version, including alpha/beta/rc tags. +# If you don’t need the separation provided between version and release, +# just set them both to the same value. +try: + from pyrty import __version__ as version +except ImportError: + version = "" + +if not version or version.lower() == "unknown": + version = os.getenv("READTHEDOCS_VERSION", "unknown") # automatically set by RTD + +release = version + +# The language for content autogenerated by Sphinx. Refer to documentation +# for a list of supported languages. +# language = None + +# There are two options for replacing |today|: either, you set today to some +# non-false value, then it is used: +# today = '' +# Else, today_fmt is used as the format for a strftime call. +# today_fmt = '%B %d, %Y' + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", ".venv"] + +# The reST default role (used for this markup: `text`) to use for all documents. +# default_role = None + +# If true, '()' will be appended to :func: etc. cross-reference text. +# add_function_parentheses = True + +# If true, the current module name will be prepended to all description +# unit titles (such as .. function::). +# add_module_names = True + +# If true, sectionauthor and moduleauthor directives will be shown in the +# output. They are ignored by default. +# show_authors = False + +# The name of the Pygments (syntax highlighting) style to use. +pygments_style = "sphinx" + +# A list of ignored prefixes for module index sorting. +# modindex_common_prefix = [] + +# If true, keep warnings as "system message" paragraphs in the built documents. +# keep_warnings = False + +# If this is True, todo emits a warning for each TODO entries. The default is False. +todo_emit_warnings = True + + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +html_theme = "alabaster" + +# Theme options are theme-specific and customize the look and feel of a theme +# further. For a list of options available for each theme, see the +# documentation. +html_theme_options = { + "sidebar_width": "300px", + "page_width": "1200px" +} + +# Add any paths that contain custom themes here, relative to this directory. +# html_theme_path = [] + +# The name for this set of Sphinx documents. If None, it defaults to +# " v documentation". +# html_title = None + +# A shorter title for the navigation bar. Default is the same as html_title. +# html_short_title = None + +# The name of an image file (relative to this directory) to place at the top +# of the sidebar. +# html_logo = "" + +# The name of an image file (within the static path) to use as favicon of the +# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 +# pixels large. +# html_favicon = None + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ["_static"] + +# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, +# using the given strftime format. +# html_last_updated_fmt = '%b %d, %Y' + +# If true, SmartyPants will be used to convert quotes and dashes to +# typographically correct entities. +# html_use_smartypants = True + +# Custom sidebar templates, maps document names to template names. +# html_sidebars = {} + +# Additional templates that should be rendered to pages, maps page names to +# template names. +# html_additional_pages = {} + +# If false, no module index is generated. +# html_domain_indices = True + +# If false, no index is generated. +# html_use_index = True + +# If true, the index is split into individual pages for each letter. +# html_split_index = False + +# If true, links to the reST sources are added to the pages. +# html_show_sourcelink = True + +# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. +# html_show_sphinx = True + +# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. +# html_show_copyright = True + +# If true, an OpenSearch description file will be output, and all pages will +# contain a tag referring to it. The value of this option must be the +# base URL from which the finished HTML is served. +# html_use_opensearch = '' + +# This is the file name suffix for HTML files (e.g. ".xhtml"). +# html_file_suffix = None + +# Output file base name for HTML help builder. +htmlhelp_basename = "pyrty-doc" + + +# -- Options for LaTeX output ------------------------------------------------ + +latex_elements = { + # The paper size ("letterpaper" or "a4paper"). + # "papersize": "letterpaper", + # The font size ("10pt", "11pt" or "12pt"). + # "pointsize": "10pt", + # Additional stuff for the LaTeX preamble. + # "preamble": "", +} + +# Grouping the document tree into LaTeX files. List of tuples +# (source start file, target name, title, author, documentclass [howto/manual]). +latex_documents = [ + ("index", "user_guide.tex", "pyrty Documentation", "t-silvers", "manual") +] + +# The name of an image file (relative to this directory) to place at the top of +# the title page. +# latex_logo = "" + +# For "manual" documents, if this is true, then toplevel headings are parts, +# not chapters. +# latex_use_parts = False + +# If true, show page references after internal links. +# latex_show_pagerefs = False + +# If true, show URL addresses after external links. +# latex_show_urls = False + +# Documents to append as an appendix to all manuals. +# latex_appendices = [] + +# If false, no module index is generated. +# latex_domain_indices = True + +# -- External mapping -------------------------------------------------------- +python_version = ".".join(map(str, sys.version_info[0:2])) +intersphinx_mapping = { + "sphinx": ("https://www.sphinx-doc.org/en/master", None), + "python": ("https://docs.python.org/" + python_version, None), + "matplotlib": ("https://matplotlib.org", None), + "numpy": ("https://numpy.org/doc/stable", None), + "sklearn": ("https://scikit-learn.org/stable", None), + "pandas": ("https://pandas.pydata.org/pandas-docs/stable", None), + "scipy": ("https://docs.scipy.org/doc/scipy/reference", None), + "setuptools": ("https://setuptools.pypa.io/en/stable/", None), + "pyscaffold": ("https://pyscaffold.org/en/stable", None), +} + +print(f"loading configurations for {project} {version} ...", file=sys.stderr) diff --git a/docs/contributing.rst b/docs/contributing.rst new file mode 100644 index 0000000..e582053 --- /dev/null +++ b/docs/contributing.rst @@ -0,0 +1 @@ +.. include:: ../CONTRIBUTING.rst diff --git a/docs/index.rst b/docs/index.rst new file mode 100644 index 0000000..44d7fca --- /dev/null +++ b/docs/index.rst @@ -0,0 +1,61 @@ +===== +pyrty +===== + +This is the documentation of **pyrty**. + +.. note:: + + This is the main page of your project's `Sphinx`_ documentation. + It is formatted in `reStructuredText`_. Add additional pages + by creating rst-files in ``docs`` and adding them to the `toctree`_ below. + Use then `references`_ in order to link them from this page, e.g. + :ref:`authors` and :ref:`changes`. + + It is also possible to refer to the documentation of other Python packages + with the `Python domain syntax`_. By default you can reference the + documentation of `Sphinx`_, `Python`_, `NumPy`_, `SciPy`_, `matplotlib`_, + `Pandas`_, `Scikit-Learn`_. You can add more by extending the + ``intersphinx_mapping`` in your Sphinx's ``conf.py``. + + The pretty useful extension `autodoc`_ is activated by default and lets + you include documentation from docstrings. Docstrings can be written in + `Google style`_ (recommended!), `NumPy style`_ and `classical style`_. + + +Contents +======== + +.. toctree:: + :maxdepth: 2 + + Overview + Contributions & Help + License + Authors + Changelog + Module Reference + + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` + +.. _toctree: https://www.sphinx-doc.org/en/master/usage/restructuredtext/directives.html +.. _reStructuredText: https://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html +.. _references: https://www.sphinx-doc.org/en/stable/markup/inline.html +.. _Python domain syntax: https://www.sphinx-doc.org/en/master/usage/restructuredtext/domains.html#the-python-domain +.. _Sphinx: https://www.sphinx-doc.org/ +.. _Python: https://docs.python.org/ +.. _Numpy: https://numpy.org/doc/stable +.. _SciPy: https://docs.scipy.org/doc/scipy/reference/ +.. _matplotlib: https://matplotlib.org/contents.html# +.. _Pandas: https://pandas.pydata.org/pandas-docs/stable +.. _Scikit-Learn: https://scikit-learn.org/stable +.. _autodoc: https://www.sphinx-doc.org/en/master/ext/autodoc.html +.. _Google style: https://google.github.io/styleguide/pyguide.html#38-comments-and-docstrings +.. _NumPy style: https://numpydoc.readthedocs.io/en/latest/format.html +.. _classical style: https://www.sphinx-doc.org/en/master/domains.html#info-field-lists diff --git a/docs/license.rst b/docs/license.rst new file mode 100644 index 0000000..3989c51 --- /dev/null +++ b/docs/license.rst @@ -0,0 +1,7 @@ +.. _license: + +======= +License +======= + +.. include:: ../LICENSE.txt diff --git a/docs/readme.rst b/docs/readme.rst new file mode 100644 index 0000000..81995ef --- /dev/null +++ b/docs/readme.rst @@ -0,0 +1,2 @@ +.. _readme: +.. include:: ../README.rst diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 0000000..2ddf98a --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,5 @@ +# Requirements file for ReadTheDocs, check .readthedocs.yml. +# To build the module reference correctly, make sure every external package +# under `install_requires` in `setup.cfg` is also listed here! +sphinx>=3.2.1 +# sphinx_rtd_theme diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..89a5bed --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,9 @@ +[build-system] +# AVOID CHANGING REQUIRES: IT WILL BE UPDATED BY PYSCAFFOLD! +requires = ["setuptools>=46.1.0", "setuptools_scm[toml]>=5"] +build-backend = "setuptools.build_meta" + +[tool.setuptools_scm] +# For smarter version schemes and other configuration options, +# check out https://github.com/pypa/setuptools_scm +version_scheme = "no-guess-dev" diff --git a/setup.cfg b/setup.cfg new file mode 100644 index 0000000..74dbc8e --- /dev/null +++ b/setup.cfg @@ -0,0 +1,123 @@ +# This file is used to configure your project. +# Read more about the various options under: +# https://setuptools.pypa.io/en/latest/userguide/declarative_config.html +# https://setuptools.pypa.io/en/latest/references/keywords.html + +[metadata] +name = pyrty +description = Add a short description here! +author = t-silvers +author_email = tsilvers@stanford.edu +license = MIT +license_files = LICENSE.txt +long_description = file: README.rst +long_description_content_type = text/x-rst; charset=UTF-8 +url = https://github.com/pyscaffold/pyscaffold/ +# Add here related links, for example: +project_urls = + Documentation = https://pyscaffold.org/ +# Source = https://github.com/pyscaffold/pyscaffold/ +# Changelog = https://pyscaffold.org/en/latest/changelog.html +# Tracker = https://github.com/pyscaffold/pyscaffold/issues +# Conda-Forge = https://anaconda.org/conda-forge/pyscaffold +# Download = https://pypi.org/project/PyScaffold/#files +# Twitter = https://twitter.com/PyScaffold + +# Change if running only on Windows, Mac or Linux (comma-separated) +platforms = any + +# Add here all kinds of additional classifiers as defined under +# https://pypi.org/classifiers/ +classifiers = + Development Status :: 4 - Beta + Programming Language :: Python + + +[options] +zip_safe = False +packages = find_namespace: +include_package_data = True +package_dir = + =src + +# Require a min/specific Python version (comma-separated conditions) +# python_requires = >=3.8 + +# Add here dependencies of your project (line-separated), e.g. requests>=2.2,<3.0. +# Version specifiers like >=2.2,<3.0 avoid problems due to API changes in +# new major versions. This works if the required packages follow Semantic Versioning. +# For more information, check out https://semver.org/. +install_requires = + importlib-metadata; python_version<"3.8" + + +[options.packages.find] +where = src +exclude = + tests + +[options.extras_require] +# Add here additional requirements for extra features, to install with: +# `pip install pyrty[PDF]` like: +# PDF = ReportLab; RXP + +# Add here test requirements (semicolon/line-separated) +testing = + setuptools + pytest + pytest-cov + +[options.entry_points] +# Add here console scripts like: +# console_scripts = +# script_name = pyrty.module:function +# For example: +# console_scripts = +# fibonacci = pyrty.skeleton:run +# And any other entry points, for example: +# pyscaffold.cli = +# awesome = pyscaffoldext.awesome.extension:AwesomeExtension + +[tool:pytest] +# Specify command line options as you would do when invoking pytest directly. +# e.g. --cov-report html (or xml) for html/xml output or --junitxml junit.xml +# in order to write a coverage file that can be read by Jenkins. +# CAUTION: --cov flags may prohibit setting breakpoints while debugging. +# Comment those flags to avoid this pytest issue. +addopts = + --cov pyrty --cov-report term-missing + --verbose +norecursedirs = + dist + build + .tox +testpaths = tests +# Use pytest markers to select/deselect specific tests +# markers = +# slow: mark tests as slow (deselect with '-m "not slow"') +# system: mark end-to-end system tests + +[devpi:upload] +# Options for the devpi: PyPI server and packaging tool +# VCS export must be deactivated since we are using setuptools-scm +no_vcs = 1 +formats = bdist_wheel + +[flake8] +# Some sane defaults for the code style checker flake8 +max_line_length = 88 +extend_ignore = E203, W503 +# ^ Black-compatible +# E203 and W503 have edge cases handled by black +exclude = + .tox + build + dist + .eggs + docs/conf.py + +[pyscaffold] +# PyScaffold's parameters when the project was created. +# This will be used when updating. Do not change! +version = 4.3.1 +package = pyrty diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..588a320 --- /dev/null +++ b/setup.py @@ -0,0 +1,21 @@ +""" + Setup file for pyrty. + Use setup.cfg to configure your project. + + This file was generated with PyScaffold 4.3.1. + PyScaffold helps you to put up the scaffold of your new Python project. + Learn more under: https://pyscaffold.org/ +""" +from setuptools import setup + +if __name__ == "__main__": + try: + setup(use_scm_version={"version_scheme": "no-guess-dev"}) + except: # noqa + print( + "\n\nAn error occurred while building the project, " + "please ensure you have the most updated version of setuptools, " + "setuptools_scm and wheel with:\n" + " pip install -U setuptools setuptools_scm wheel\n\n" + ) + raise diff --git a/src/pyrty/__init__.py b/src/pyrty/__init__.py new file mode 100644 index 0000000..e451f10 --- /dev/null +++ b/src/pyrty/__init__.py @@ -0,0 +1,16 @@ +import sys + +if sys.version_info[:2] >= (3, 8): + # TODO: Import directly (no need for conditional) when `python_requires = >= 3.8` + from importlib.metadata import PackageNotFoundError, version # pragma: no cover +else: + from importlib_metadata import PackageNotFoundError, version # pragma: no cover + +try: + # Change here if project is renamed and does not equal the package name + dist_name = __name__ + __version__ = version(dist_name) +except PackageNotFoundError: # pragma: no cover + __version__ = "unknown" +finally: + del version, PackageNotFoundError diff --git a/src/pyrty/skeleton.py b/src/pyrty/skeleton.py new file mode 100644 index 0000000..0ff0c38 --- /dev/null +++ b/src/pyrty/skeleton.py @@ -0,0 +1,149 @@ +""" +This is a skeleton file that can serve as a starting point for a Python +console script. To run this script uncomment the following lines in the +``[options.entry_points]`` section in ``setup.cfg``:: + + console_scripts = + fibonacci = pyrty.skeleton:run + +Then run ``pip install .`` (or ``pip install -e .`` for editable mode) +which will install the command ``fibonacci`` inside your current environment. + +Besides console scripts, the header (i.e. until ``_logger``...) of this file can +also be used as template for Python modules. + +Note: + This file can be renamed depending on your needs or safely removed if not needed. + +References: + - https://setuptools.pypa.io/en/latest/userguide/entry_point.html + - https://pip.pypa.io/en/stable/reference/pip_install +""" + +import argparse +import logging +import sys + +from pyrty import __version__ + +__author__ = "t-silvers" +__copyright__ = "t-silvers" +__license__ = "MIT" + +_logger = logging.getLogger(__name__) + + +# ---- Python API ---- +# The functions defined in this section can be imported by users in their +# Python scripts/interactive interpreter, e.g. via +# `from pyrty.skeleton import fib`, +# when using this Python module as a library. + + +def fib(n): + """Fibonacci example function + + Args: + n (int): integer + + Returns: + int: n-th Fibonacci number + """ + assert n > 0 + a, b = 1, 1 + for _i in range(n - 1): + a, b = b, a + b + return a + + +# ---- CLI ---- +# The functions defined in this section are wrappers around the main Python +# API allowing them to be called directly from the terminal as a CLI +# executable/script. + + +def parse_args(args): + """Parse command line parameters + + Args: + args (List[str]): command line parameters as list of strings + (for example ``["--help"]``). + + Returns: + :obj:`argparse.Namespace`: command line parameters namespace + """ + parser = argparse.ArgumentParser(description="Just a Fibonacci demonstration") + parser.add_argument( + "--version", + action="version", + version="pyrty {ver}".format(ver=__version__), + ) + parser.add_argument(dest="n", help="n-th Fibonacci number", type=int, metavar="INT") + parser.add_argument( + "-v", + "--verbose", + dest="loglevel", + help="set loglevel to INFO", + action="store_const", + const=logging.INFO, + ) + parser.add_argument( + "-vv", + "--very-verbose", + dest="loglevel", + help="set loglevel to DEBUG", + action="store_const", + const=logging.DEBUG, + ) + return parser.parse_args(args) + + +def setup_logging(loglevel): + """Setup basic logging + + Args: + loglevel (int): minimum loglevel for emitting messages + """ + logformat = "[%(asctime)s] %(levelname)s:%(name)s:%(message)s" + logging.basicConfig( + level=loglevel, stream=sys.stdout, format=logformat, datefmt="%Y-%m-%d %H:%M:%S" + ) + + +def main(args): + """Wrapper allowing :func:`fib` to be called with string arguments in a CLI fashion + + Instead of returning the value from :func:`fib`, it prints the result to the + ``stdout`` in a nicely formatted message. + + Args: + args (List[str]): command line parameters as list of strings + (for example ``["--verbose", "42"]``). + """ + args = parse_args(args) + setup_logging(args.loglevel) + _logger.debug("Starting crazy calculations...") + print("The {}-th Fibonacci number is {}".format(args.n, fib(args.n))) + _logger.info("Script ends here") + + +def run(): + """Calls :func:`main` passing the CLI arguments extracted from :obj:`sys.argv` + + This function can be used as entry point to create console scripts with setuptools. + """ + main(sys.argv[1:]) + + +if __name__ == "__main__": + # ^ This is a guard statement that will prevent the following code from + # being executed in the case someone imports this file instead of + # executing it as a script. + # https://docs.python.org/3/library/__main__.html + + # After installing your project with pip, users can also run your Python + # modules as scripts via the ``-m`` flag, as defined in PEP 338:: + # + # python -m pyrty.skeleton 42 + # + run() diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..307bc49 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,10 @@ +""" + Dummy conftest.py for pyrty. + + If you don't know what this is for, just leave it empty. + Read more about conftest.py under: + - https://docs.pytest.org/en/stable/fixture.html + - https://docs.pytest.org/en/stable/writing_plugins.html +""" + +# import pytest diff --git a/tests/test_skeleton.py b/tests/test_skeleton.py new file mode 100644 index 0000000..751f6f4 --- /dev/null +++ b/tests/test_skeleton.py @@ -0,0 +1,25 @@ +import pytest + +from pyrty.skeleton import fib, main + +__author__ = "t-silvers" +__copyright__ = "t-silvers" +__license__ = "MIT" + + +def test_fib(): + """API Tests""" + assert fib(1) == 1 + assert fib(2) == 1 + assert fib(7) == 13 + with pytest.raises(AssertionError): + fib(-10) + + +def test_main(capsys): + """CLI Tests""" + # capsys is a pytest fixture that allows asserts against stdout/stderr + # https://docs.pytest.org/en/stable/capture.html + main(["7"]) + captured = capsys.readouterr() + assert "The 7-th Fibonacci number is 13" in captured.out diff --git a/tox.ini b/tox.ini new file mode 100644 index 0000000..54f9323 --- /dev/null +++ b/tox.ini @@ -0,0 +1,91 @@ +# Tox configuration file +# Read more under https://tox.wiki/ +# THIS SCRIPT IS SUPPOSED TO BE AN EXAMPLE. MODIFY IT ACCORDING TO YOUR NEEDS! + +[tox] +minversion = 3.24 +envlist = default +isolated_build = True + + +[testenv] +description = Invoke pytest to run automated tests +setenv = + TOXINIDIR = {toxinidir} +passenv = + HOME + SETUPTOOLS_* +extras = + testing +commands = + pytest {posargs} + + +# # To run `tox -e lint` you need to make sure you have a +# # `.pre-commit-config.yaml` file. See https://pre-commit.com +# [testenv:lint] +# description = Perform static analysis and style checks +# skip_install = True +# deps = pre-commit +# passenv = +# HOMEPATH +# PROGRAMDATA +# SETUPTOOLS_* +# commands = +# pre-commit run --all-files {posargs:--show-diff-on-failure} + + +[testenv:{build,clean}] +description = + build: Build the package in isolation according to PEP517, see https://github.com/pypa/build + clean: Remove old distribution files and temporary build artifacts (./build and ./dist) +# https://setuptools.pypa.io/en/stable/build_meta.html#how-to-use-it +skip_install = True +changedir = {toxinidir} +deps = + build: build[virtualenv] +passenv = + SETUPTOOLS_* +commands = + clean: python -c 'import shutil; [shutil.rmtree(p, True) for p in ("build", "dist", "docs/_build")]' + clean: python -c 'import pathlib, shutil; [shutil.rmtree(p, True) for p in pathlib.Path("src").glob("*.egg-info")]' + build: python -m build {posargs} + + +[testenv:{docs,doctests,linkcheck}] +description = + docs: Invoke sphinx-build to build the docs + doctests: Invoke sphinx-build to run doctests + linkcheck: Check for broken links in the documentation +passenv = + SETUPTOOLS_* +setenv = + DOCSDIR = {toxinidir}/docs + BUILDDIR = {toxinidir}/docs/_build + docs: BUILD = html + doctests: BUILD = doctest + linkcheck: BUILD = linkcheck +deps = + -r {toxinidir}/docs/requirements.txt + # ^ requirements.txt shared with Read The Docs +commands = + sphinx-build --color -b {env:BUILD} -d "{env:BUILDDIR}/doctrees" "{env:DOCSDIR}" "{env:BUILDDIR}/{env:BUILD}" {posargs} + + +[testenv:publish] +description = + Publish the package you have been developing to a package index server. + By default, it uses testpypi. If you really want to publish your package + to be publicly accessible in PyPI, use the `-- --repository pypi` option. +skip_install = True +changedir = {toxinidir} +passenv = + # See: https://twine.readthedocs.io/en/latest/ + TWINE_USERNAME + TWINE_PASSWORD + TWINE_REPOSITORY + TWINE_REPOSITORY_URL +deps = twine +commands = + python -m twine check dist/* + python -m twine upload {posargs:--repository {env:TWINE_REPOSITORY:testpypi}} dist/*