diff --git a/CRAN-RELEASE b/CRAN-RELEASE new file mode 100644 index 0000000..1ce719a --- /dev/null +++ b/CRAN-RELEASE @@ -0,0 +1,2 @@ +This package was submitted to CRAN on 2019-06-14. +Once it is accepted, delete this file and tag the release (commit d858afd15f). diff --git a/DESCRIPTION b/DESCRIPTION index 18b48f6..6931607 100755 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: SSDM Type: Package Title: Stacked Species Distribution Modelling -Version: 0.2.5.9000 +Version: 0.2.6 Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Philippe Birnbaum Maintainer: Sylvain Schmitt URL: https://github.com/sylvainschmitt/SSDM diff --git a/NEWS.md b/NEWS.md index 330e2e0..d72d4ca 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,6 +1,11 @@ NEWS ================ +SSDM 0.2.6 +=============== + +- CRAN v0.2.6 submission + SSDM 0.2.5.9001 =============== diff --git a/README.md b/README.md index 598d88c..5474a5d 100755 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ SSDM: Stacked species distribution modelling ================ -[![Travis-CI Build Status](https://travis-ci.org/sylvainschmitt/SSDM.svg?branch=master)](https://travis-ci.org/sylvainschmitt/SSDM) [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/sylvainschmitt/SSDM?branch=master&svg=true)](https://ci.appveyor.com/project/sylvainschmitt/SSDM) [![CRAN](https://www.r-pkg.org/badges/version/SSDM)](https://CRAN.R-project.org/package=SSDM) [![Downloads](http://cranlogs.r-pkg.org/badges/SSDM?color=brightgreen)](http://www.r-pkg.org/pkg/SSDM) [![Coverage Status](https://img.shields.io/codecov/c/github/sylvainschmitt/SSDM/master.svg)](https://codecov.io/github/sylvainschmitt/SSDM?branch=master) [![Research software impact](http://depsy.org/api/package/cran/SSDM/badge.svg)](http://depsy.org/package/r/SSDM) +[![Travis-CI Build Status](https://travis-ci.org/sylvainschmitt/SSDM.svg?branch=master)](https://travis-ci.org/sylvainschmitt/SSDM)[![CRAN](https://www.r-pkg.org/badges/version/SSDM)](https://CRAN.R-project.org/package=SSDM) [![Downloads](http://cranlogs.r-pkg.org/badges/SSDM?color=brightgreen)](http://www.r-pkg.org/pkg/SSDM) [![Coverage Status](https://img.shields.io/codecov/c/github/sylvainschmitt/SSDM/master.svg)](https://codecov.io/github/sylvainschmitt/SSDM?branch=master) [![Research software impact](http://depsy.org/api/package/cran/SSDM/badge.svg)](http://depsy.org/package/r/SSDM) SSDM is a package to map species richness and endemism based on stacked species distribution models (SSDM). Individual SDMs can be created using a single or multiple algorithms (ensemble SDMs). For each species, an SDM can yield a habitat suitability map, a binary map, a between-algorithm variance map, and can assess variable importance, algorithm accuracy, and between-algorithm correlation. Methods to stack individual SDMs include summing individual probabilities and thresholding then summing. Thresholding can be based on a specific evaluation metric or by drawing repeatedly from a Bernouilli distribution. The SSDM package also provides a user-friendly interface `gui`. diff --git a/appveyor.yml b/appveyor.yml deleted file mode 100755 index e32d316..0000000 --- a/appveyor.yml +++ /dev/null @@ -1,42 +0,0 @@ -# DO NOT CHANGE the "init" and "install" sections below - -# Download script file from GitHub -init: - ps: | - $ErrorActionPreference = "Stop" - Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1" - Import-Module '..\appveyor-tool.ps1' - -install: - ps: Bootstrap - -# Adapt as necessary starting from here - -build_script: - - travis-tool.sh install_deps - -test_script: - - travis-tool.sh run_tests - -on_failure: - - 7z a failure.zip *.Rcheck\* - - appveyor PushArtifact failure.zip - -artifacts: - - path: '*.Rcheck\**\*.log' - name: Logs - - - path: '*.Rcheck\**\*.out' - name: Logs - - - path: '*.Rcheck\**\*.fail' - name: Logs - - - path: '*.Rcheck\**\*.Rout' - name: Logs - - - path: '\*_*.tar.gz' - name: Bits - - - path: '\*_*.zip' - name: Bits diff --git a/cran-comments.md b/cran-comments.md index 7845aaa..8013c98 100755 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,16 +1,18 @@ -## Test environments -* local Ubuntu 16.04 LTS, R 3.4.3 -* Travis CI Ubuntu 14.04.5 LTS, R 3.4.2 -* AppVeyor Windows Server 2012, R 3.4.3 +## Test environments + +* local Ubuntu 16.04 LTS, R 3.6.0 +* Travis CI Ubuntu 14.04.5 LTS, R-release * R-hub Fedora Linux, R-devel, clang * R-hub Ubuntu Linux 16.04 LTS, R-release * R-hub Windows Server 2008 R2 SP1, R-devel * Win-builder Windows, R-3.7.0 ## R CMD check results + There were no NOTEs, ERRORs or WARNINGs. ## Resubmission + This is a resubmission. In this version I have: -* Fixed a major bug from version 0.2.4 due to dependency compatibility with raster 2.9-5 +* Fixed a major bug from version 0.2.5 due to dependency compatibility with raster 2.9-5