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Sunbeam extensions should use builtin dependency handling #260

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louiejtaylor opened this issue Dec 12, 2019 · 0 comments
Open
12 of 14 tasks

Sunbeam extensions should use builtin dependency handling #260

louiejtaylor opened this issue Dec 12, 2019 · 0 comments
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@Ulthran

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louiejtaylor commented Dec 12, 2019 •
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Title. Also many of them could benefit from a README update. Am working through these at my own leisure; anyone is welcome to help out if they feel like it!

Extensions:

These are most of the ones from https://www.sunbeam-labs.org/directory.html (and I think ones people might use). I don't think it's necessary to update the examples from the paper.
louiejtaylor added a commit to sunbeam-labs/sbx_subsample that referenced this issue Dec 12, 2019
@louiejtaylor
use builtin dep handling (sunbeam-labs/sunbeam#260)
9b9e8a9
louiejtaylor added a commit to sunbeam-labs/sbx_coassembly that referenced this issue Dec 12, 2019
@louiejtaylor
use built-in dependency handling (sunbeam-labs/sunbeam#260)
e926dfa
louiejtaylor added a commit to sunbeam-labs/sbx_anvio that referenced this issue Dec 13, 2019
@louiejtaylor
update dependencies, rules (sunbeam-labs/sunbeam#260)
af6314c
louiejtaylor added a commit to sunbeam-labs/sbx_spades that referenced this issue Dec 13, 2019
@louiejtaylor
update deps, rules, README (sunbeam-labs/sunbeam#260)
691b782
louiejtaylor added a commit to louiejtaylor/sbx_rgi that referenced this issue Dec 13, 2019
@louiejtaylor
simplify extension running, use builtin dep handling (sunbeam-labs/su…
187810b 
…nbeam#260)
louiejtaylor added a commit to louiejtaylor/sbx_kraken_uniq that referenced this issue Dec 13, 2019
@louiejtaylor
Minor updates (to be in line with sunbeam-labs/sunbeam#260)
114ee8e
@louiejtaylor louiejtaylor mentioned this issue Dec 13, 2019
Merged
louiejtaylor added a commit to louiejtaylor/sbx_dedup that referenced this issue Dec 13, 2019
@louiejtaylor
update to use snakemake handling of conda dependencies (sunbeam-labs/…
0789b20 
…sunbeam#260)
@louiejtaylor louiejtaylor mentioned this issue Dec 13, 2019
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This was referenced Apr 6, 2021
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@Ulthran Ulthran self-assigned this Dec 13, 2022
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