Merge pull request #2 from stephenhky/py3test

Py3test

Author: stephenhky

.travis.yml

@@ -1,21 +1,17 @@
-sudo: true
-dist: trusty
-sudo: required
 language: python
 python:
   - "2.7"
-before_install:
-  - wget 'http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh' -O miniconda.sh
-  - chmod +x miniconda.sh
-  - ./miniconda.sh -b
-  - export PATH=/home/travis/miniconda2/bin:$PATH
-  - conda update --yes conda
-  - sudo apt-get update
+  - "3.5"
+  - "3.5-dev"  # 3.5 development branch
+  - "3.6"
+  - "3.6-dev"  # 3.6 development branch
+#  - "3.7-dev"  # 3.7 development branch    # failing at 3.7-dev
+# command to install dependencies
+install:
   - sudo apt-get install libc6
   - sudo apt-get install gfortran
-install:
-  - conda create --yes -n graphflow-test python=$TRAVIS_PYTHON_VERSION pip numpy scipy
-  - source activate graphflow-test
+  - pip install -U pandas
   - pip install -U .
+# command to run tests
 script:
-  - python setup.py test
+  - pytest # or py.test for Python versions 3.5 and below

README.md

@@ -1,5 +1,7 @@
 # graphflow : Algorithms for Graph Flow Analysis
 
+[![Build Status](https://travis-ci.org/stephenhky/GraphFlow.svg?branch=master)](https://travis-ci.org/stephenhky/GraphFlow)
+
 This Python package provides numerical routines for graph flow analysis, particularly:
 
 * PageRank
@@ -17,5 +19,6 @@ After ensuring they have been installed, type the following to install `graphflo
 
 # News
 
+* 06/14/2018: `graphflow` 0.1.3 released.
 * 06/06/2018: `graphflow` 0.1.2 released.
 * 04/12/2018: `graphflow` 0.1.1 released.

doc/source/conf.py

@@ -59,7 +59,7 @@
 # The short X.Y version.
 version = u'0.1'
 # The full version, including alpha/beta/rc tags.
-release = u'0.1.2'
+release = u'0.1.3'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

doc/source/index.rst

@@ -6,6 +6,9 @@
 Welcome to GraphFlow's documentation!
 =====================================
 
+.. image:: https://travis-ci.org/stephenhky/GraphFlow.svg?branch=master
+   :target: https://travis-ci.org/stephenhky/GraphFlow
+
 Contents:
 
 .. toctree::

doc/source/news.rst

@@ -1,12 +1,19 @@
 News
 ====
 
+* 06/14/2018: `graphflow` 0.1.3 released.
 * 06/06/2018: `graphflow` 0.1.2 released.
 * 04/12/2018: `graphflow` 0.1.1 released.
 
 What's New
 ----------
 
+Release 0.1.3 (Jun 14, 2018)
+----------------------------
+
+* Compatibility with Python 3.5 and 3.6.
+
+
 Release 0.1.2 (Jun 06, 2018)
 ----------------------------
 

graphflow/simvoltage/resistancedist.py

@@ -19,12 +19,12 @@ def __init__(self, nodes=default_nodes, edges=default_edges):
         self.Omega = self.computeResistanceDistance()
 
     def getResistance(self, node1, node2):
-        if self.nodesIdx.has_key(node1) and self.nodesIdx.has_key(node2):
+        if (node1 in self.nodesIdx) and (node2 in self.nodesIdx):
             idx0 = self.nodesIdx[node1]
             idx1 = self.nodesIdx[node2]
             return self.Omega[idx0, idx1]
         else:
-            unknown_keys = [node for node in [node1, node2] if not self.nodesIdx.has_key(node)]
+            unknown_keys = [node for node in [node1, node2] if not node in self.nodesIdx]
             raise Exception('Unknown key(s): '+' '.join(unknown_keys))
 
     def initializeClass(self, nodes, edges):

setup.py

@@ -10,7 +10,7 @@ def readme():
 
 
 setup(name='graphflow',
-      version="0.1.2",
+      version="0.1.3",
       description="Algorithms for Graph Flow Analysis",
       long_description="Numerical routines for analyzing data represented by graphs",
       classifiers=[