_pkgdown.yml

url: https://statdivlab.github.io/paramedic

destination: docs

reference:
    - title: "Estimate and do inference on absolute abundance"
      desc: "The core top-level function in paramedic."
      contents:
       - run_paramedic
    - title: "Print and summarize paramedic objects"
      desc: "Print and summary methods for objects of class paramedic."
      contents:
       - print.paramedic 
       - summary.paramedic
    - title: "Make predictions on new data"
      desc: "Using the posterior distribution from a paramedic fit, make predictions on new data using either a Stan model or R."
      contents:
       - predict_paramedic
       - posterior_predict.paramedic
    - title: "Process data and set up initial parameter values"
      desc: "Internal functions that ensure incoming data is valid and generates initial values to pass to stan"
      contents:
       - check_entered_data
       - make_paramedic_tibbles
       - make_paramedic_stan_data
       - process_data
    - title: "Extract estimates"
      desc: "Functions to extract point estimates and interval estimates from paramedic runs."
      contents:
       - extract_posterior_summaries
       - gen_wald_interval
       - gen_quantile_interval
    - title: "Example data"
      desc: "Load and describe example datasets"
      contents:
       - example_16S_data
       - example_qPCR_data
       - simple_example_data
    - title: "Package documentation homepage"
      desc: "Landing page for R help"
      contents:
       - paramedic