Simulation of Ant Foraging with the MNEST Package.

MNEST (Multi-agent Neuro Evolution Simulation Toolkit) is a software framework designed to model and study emergent behavior in complex systems.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Create DSSP and HSSP files

The Binding Affinity Tool (BAT.py) is a fully automated tool for absolute binding free energy (ABFE) and relative binding free energy (RBFE) calculations on protein-ligand systems, compatible with …