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@awatson1978

Abigail Watson

awatson1978
Chicago - Evansville

Bioinformaticist. Venture Altruist. Biohacker. Burner. Xinnial. Healthcare Worker. Snarky.

So, yeah. I've been hacking on computers for probably 35 years now. First open-source project was in the late 90s, related to a Black and Scholes Option Pricing Calculator I wrote while a computing lab tech at the UChicago Graduate School of Business. I can neither confirm nor deny whether a spoofed packet to a local trading company resulted in me touring my way through the Chicago Board of Trade server room before they realized I wasn't an MBA student.

Since then, for the past 20 years, I've worked in healthcare IT in some capacity or another. I have two degrees with the word 'Medicine' in them.... History of Science and Medicine (PreMed) and Biomedical Informatics. So, I basically help keep the country's hospital infrastructure running. Otherwise, all self-taught when it comes to programming.

After college, I wound up working as an MRI Tech and then PACS Administrator and Radiology Administrator at a large hospital in Brooklyn. Nuclear medicine is cool. I was on the rollout team of one of the first integrated Cerner Millennium EHR installations, and that led to me basically doing a residency at the hospital, as I rotated from department to department, doing workflow analysis and figuring out how we were going to install our new Medical Imaging Network throughout the hospital. Most of my open source work at the time was in .NET and involved medical image analysis.

After HITECH and the ACA were passed, I was burned out from constant 24/7 on-call support of the Emergency Department, so I moved over to the vendor side to help develop product. It's been a decade of consulting and freelancing since then. Mostly the same needs each time. Folks need an app or website that's either a) HIPAA compliant, b) FDA ready, or c) connects to an EHR. Do it enough times, and you figure out some common best-practices, which is how the Meteor Cookbook came about (with 1,700 stars, probably my most successful open-source project to date).

You ever watch NCIS? With Abby off in the laboratory doing her goth-chick thing? It's not too far off the mark. I'm not quite so gothed out, but my life is a surreal montage of sci-fi work at times. Growing up as a Watson, I regularly get people asking me what I know about genetics, artificial intelligence, telecommunications, medical malpractice, etc. It's a schtick, it's fun, I enjoy it. And somewhere along the way, I started developing my own workbench and tech stack and doing my own science. But that montage of sci-fi consulting is how I got involved with BitPonics, SpaceCapsule, MeteorPackaging, VisExcell, and various other orgs you might see in my profile or LinkedIn profile.

Anyhow, when MACRA and 21st Century Cures were passed (mandating interoperability protocols), I went all-in on Fast Healthcare Interoperability Resources (FHIR), which is how Meteor on FHIR got started. Don't be fooled by the number of stars. I've had to rebuild that repository a few times, for both security and strategy reasons, which would reset its star count. It's underselling it's value.

I eventually began a soft fork of the Meteor stack, and released a "Clinical" track that was optimized for security, quality control, and interoperability. Which is how the Clinical Meteor organization got set up. We were hand-crafting packages for each resource to figure out the pattern of what dependencies and functionalities each resource would want to pull in, which is how ~200 packages got developed in that organization. They're most all MIT licensed, and have been used in 70 or 80 prototypes or pilots at this point in time.

Eventually, we started figuring out the overall design pattern that the FHIR protocol was evolving towards, which was a mix of telephone switchboard and network router patterns. We were greatly inspired by the Mirth OpenConnect and WordPress, both products I had often used during the aughts. That is, each FHIR resource runs over its own communication channel; and we bundle that all up in a WordPress like tech stack that supports a plugin architecture. And that's the general idea behind Node on FHIR.

And that's how I wound up writing my own bioinformatics workbench software using the latest FHIR interoperability protocols and libraries. Sweet. You can write plugins for it and use it to connect to local hospital EHR systems. It's core is open source. It's good for blockchain DApp infrastructure. You're welcome. ;)

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1 sponsor has funded awatson1978’s work.

@jontybrook

Featured work

  1. awatson1978/meteor-api

    Meteor API with tab completion and syntax highlighting.

    CSS 80
  2. awatson1978/rest-api

    REST API for Meteor, using Iron Router.

    JavaScript 77
  3. awatson1978/starrynight

    Scaffolding and Testing tool optimized for Meteor apps.

    JavaScript 53
  4. awatson1978/groupthink

    Meteor bulletin-board style forum.

    JavaScript 26
  5. awatson1978/clinical-nightwatch

    Ultra-easy acceptance testing for your Meteor app with Selenium and Nightwatch.

    Shell 21
  6. awatson1978/deprecated-clinical-hipaa-audit-log

    HIPAA Audit log for Meteor applications built with Clinical UI.

    JavaScript 15

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$1 a month

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Donor
Hey, getting one dollar a month from everybody who starred the Meteor Cookbook (which had 1,700 stars) would have totally kept that project afloat. If your support level is $1/mo, you'd still have my sincere thanks and appreciation.

$5 a month

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Coffee Clatch
A cup of coffee each month. It's easy on your budget; and if I get a dozen people chipping in at this level, that can cover a utility bill. If you want to see a feature request in that's not on our roadmap or want to lobby for a particular feature, this is a great place to start.

$20 a month

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Bag of Coffee
Buy a bag of coffee for me and the team each month. The world runs on coffee. This is the tier that fuels bug reports and feature requests getting resolved.

$100 a month

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Utility Bill
You really want to help out? Pay a monthly utility bill for a year. We have a few... T-Mobile, CircleCI, Adobe, Galaxy Hosting, and a few others. In return, we will be able to host more documentation and demos, expand quality control test coverage, do more mobile testing over cellular networks, increase the number of design iterations, and so forth. Which all winds up helping develop a better product.

$200 a month

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Meetup Sponsor
Help expand the message of open-source software by underwriting a monthly meetup. We have a monthly user's group and connectathon and could use pizza/beer money for those folks who show up. And more people are likely to show up if there's free food. If we get multiple sponsors, we'll do weekly hacknights as well or organize bigger events. And we'll be sure to recognize our sponsors in the meeting minutes, when providing food, and other suitable moments. It's a win-win-win all around.

$1,000 a month

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Conference Sponsor
Getting to HL7 conferences is expensive. They're about $1500 each to attend, and then there's another $1000 for air travel, hotels, etc. And with 4 working group meetings a year, that's about $12,000 that I've been paying out of my own pocket each year to develop this software. Average that out, and it's about $1,000 per month. Sponsorship at this level will help me (and others on my team) attend conferences and keep Node on FHIR up to date.

$2,500 a month

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Office Rental
$2.5K per month starts becoming real-estate rental money. Help us rent an office, or help pay staff payroll (i.e. their rent). Getting contributions at this level helps us start hiring people and growing Symptomatic, Clinical Meteor, Bitponics, and our other projects as a business. Besides an office, I've got my eye on a product showroom, a couple of medical home properties, a garage/warehouse, a greenhouse, and a few other spaces. All real estate would be rented in Chicago and you would have visitation rights of some sort that we would work out.

$5,000 a month

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Medical/Business School
Have't ruled out Medical School or Business Schools. I have two degrees towards it, a viable business, and have taken classes at Pritzker School of Medicine and the Booth School of Business already through my Biomedical Informatics degree. Only thing from preventing me from creating modules on pulmonology, cardiology, radiology, oncology, etc, is clearing up my outstanding balance with the Bursar's office. Suffice it to say that the only reason I'm not working towards more classes and credentials is I'm trying to catch up with existing loans.