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humanrRNA database #401

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gk1610 opened this issue Aug 4, 2023 · 0 comments
Open

humanrRNA database #401

gk1610 opened this issue Aug 4, 2023 · 0 comments
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gk1610 commented Aug 4, 2023 •
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I have cageseq data from human postmortem brains and I want to remove rRNA sequences from that. I am using smr_v4.3_default_db.fasta as a reference from your new database file "https://github.com/sortmerna/sortmerna/releases/tag/v4.2.0"

Is this okay? I do not have to grep human rRNA sequences from this file? what about other species sequences? they won't interfere with alignment?
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@gk1610 @cmith44