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In sortmerna help message, blast output is indicated as (Blast - m 8 format). This corresponds to an outdated version of Blast, not in use anymore for more than 10 years.
The current version of BLAST is Blast+ NCBI. In this version, the tabular format corresponds to -outfmt 6.
Therefore, I suggest the help message be modified to '1' - tabular(Blast+ -outfmt 6 format)
The text was updated successfully, but these errors were encountered:
https://github.com/biocore/sortmerna/blob/4405830700ca14485aa2d4081d69cac87c429dbd/include/options.hpp#L147
In
sortmerna
help message, blast output is indicated as(Blast - m 8 format)
. This corresponds to an outdated version of Blast, not in use anymore for more than 10 years.The current version of BLAST is Blast+ NCBI. In this version, the tabular format corresponds to
-outfmt 6
.Therefore, I suggest the help message be modified to
'1' - tabular(Blast+ -outfmt 6 format)
The text was updated successfully, but these errors were encountered: