Merge pull request #157 from steppi/erm_tead

Erm tead

Author: bgyori

entities.csv

@@ -222,6 +222,7 @@ Ephrin_receptor
 EPN
 ERBB
 ERK
+ERM
 ESR
 ETC_complex_I
 ETC_complex_I_core

export/famplex.belns

@@ -2,8 +2,8 @@
 Keyword=FPLX
 NameString=FamPlex
 DomainString=Gene and Gene Products
-VersionString=20201020
-CreatedDateTime=2020-10-20T11:55:55
+VersionString=20201030
+CreatedDateTime=2020-10-30T22:06:51
 DescriptionString=FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
 QueryValueURL=http://identifiers.org/fplx/
 
@@ -243,6 +243,7 @@ EPHB|CGPR
 EPN|CGPR
 ERBB|CGPR
 ERK|CGPR
+ERM|CGPR
 ESR|CGPR
 ETC_complex_I|CGPR
 ETC_complex_II|CGPR

export/famplex.obo

@@ -1,5 +1,5 @@
 format-version: 1.2
-date: 20:10:2020 11:55
+date: 30:10:2020 22:06
 
 [Term]
 id: FPLX:5_hydroxytryptamine_receptors_G_protein_coupled
@@ -3778,6 +3778,18 @@ is_a: FPLX:MAPK
 inverse_is_a: HGNC:MAPK1
 inverse_is_a: HGNC:MAPK3
 
+[Term]
+id: FPLX:ERM
+name: ERM
+synonym: "ERM protein" EXACT []
+synonym: "ERM proteins" EXACT []
+synonym: "ezrin/radixin/moesin" EXACT []
+synonym: "ezrin-radixin-moesin" EXACT []
+is_a: FPLX:root
+inverse_is_a: HGNC:EZR
+inverse_is_a: HGNC:RDX
+inverse_is_a: HGNC:MSN
+
 [Term]
 id: FPLX:ESR
 name: ESR
@@ -11159,6 +11171,8 @@ has_part: HGNC:TRG
 [Term]
 id: FPLX:TEAD
 name: TEAD
+synonym: "TEAD" EXACT []
+synonym: "tea domain" EXACT []
 xref: SIGNOR:SIGNOR-PF22
 is_a: FPLX:root
 inverse_is_a: HGNC:TEAD1

export/famplex_groundings.tsv

@@ -710,6 +710,9 @@ ERK2	P28482	uniprot	Gene_or_gene_product
 ERK4	P31152	uniprot	Gene_or_gene_product
 ERK5	Q13164	uniprot	Gene_or_gene_product
 ERKs	ERK	fplx	Family
+ERM	ERM	fplx	Family
+ERM protein	ERM	fplx	Family
+ERM proteins	ERM	fplx	Family
 ERalpha	P03372	uniprot	Gene_or_gene_product
 ERα	P03372	uniprot	Gene_or_gene_product
 ESR	ESR	fplx	Family
@@ -2817,6 +2820,8 @@ exocyst complex	EXOC	fplx	Family
 exostosin glycosyltransferase family	EXT	fplx	Family
 extracellular signal-regulated kinase	ERK	fplx	Family
 ezrin	P15311	uniprot	Gene_or_gene_product
+ezrin-radixin-moesin	ERM	fplx	Family
+ezrin/radixin/moesin	ERM	fplx	Family
 farnesyltransferase	FNT	fplx	Family
 fermitin	FERMT	fplx	Family
 fermitins	FERMT	fplx	Family
@@ -3334,6 +3339,7 @@ superoxide	CHEBI:18421	chebi	Simple_chemical
 survivin	O15392	uniprot	Gene_or_gene_product
 tamoxifen	CHEBI:41774	chebi	Simple_chemical
 tau	P10636	uniprot	Gene_or_gene_product
+tea domain	TEAD	fplx	Family
 telomerase	O14746	uniprot	Gene_or_gene_product
 temozolomide	CHEBI:72564	chebi	Simple_chemical
 tenascin	TN	fplx	Family

export/hgnc_symbol_map.csv

@@ -1092,6 +1092,7 @@ EXTL2,3516
 EXTL3,3518
 EZH1,3526
 EZH2,3527
+EZR,12691
 F2,3535
 FANCA,3582
 FANCB,3583
@@ -2139,6 +2140,7 @@ MRPS5,14498
 MRPS6,14051
 MRPS7,14499
 MRPS9,14501
+MSN,7373
 MT-ATP6,7414
 MT-ATP8,7415
 MT-CO1,7419
@@ -3257,6 +3259,7 @@ RASSF9,15739
 RB1,9884
 RBL1,9893
 RBL2,9894
+RDX,9944
 REG1A,9951
 REG1B,9952
 REG3A,8601

grounding_map.csv

@@ -3061,4 +3061,10 @@ large tumor suppressor kinases,FPLX,LATS,,,,
 sarcoglycan,FPLX,Sarcoglycan_complex,,,,
 sarcoglycans,FPLX,Sarcoglycan_complex,,,,
 Sarcoglycan,FPLX,Sarcoglycan_complex,,,,
-Sarcoglycans,FPLX,Sarcoglycan_complex,,,,
+Sarcoglycans,FPLX,Sarcoglycan_complex,,,,
+ERM protein,FPLX,ERM,,,,
+ERM proteins,FPLX,ERM,,,,
+ezrin/radixin/moesin,FPLX,ERM,,,,
+ezrin-radixin-moesin,FPLX,ERM,,,,
+TEAD,FPLX,TEAD,,,,
+tea domain,FPLX,TEAD,,,,

relations.csv

@@ -4343,3 +4343,6 @@ HGNC,IFITM2,isa,FPLX,IFITM
 HGNC,IFITM3,isa,FPLX,IFITM
 HGNC,IFITM5,isa,FPLX,IFITM
 HGNC,IFITM10,isa,FPLX,IFITM
+HGNC,EZR,isa,FPLX,ERM
+HGNC,RDX,isa,FPLX,ERM
+HGNC,MSN,isa,FPLX,ERM