Fix typo in AlphabetExtractor

Author: soldatmat

src/alphabet_extractor/alphabet_extractor.jl

@@ -1,13 +1,13 @@
 """
 Creates complete alphabet of all seen symbols at each position in provided sequences.
 
-    AlphabetExctractor()
+    AlphabetExtractor()
 
 Constructs `AlphabetExtractor`.
 """
-struct AlphabetExctractor <: AbstractAlphabetExtractor end
+struct AlphabetExtractor <: AbstractAlphabetExtractor end
 
-function (::AlphabetExctractor)(sequences::AbstractVector{Vector{Char}})
+function (::AlphabetExtractor)(sequences::AbstractVector{Vector{Char}})
     alphabets = Vector{Set{Char}}(undef, length(sequences[1]))
     for position in 1:length(sequences[1])
         symbols = Vector{Char}(undef, length(sequences))

src/mutagenesis/recombination.jl

@@ -16,7 +16,7 @@ Constructs `Recombination{T}`.
 
     Recombination(; n=nothing)
 
-Constructs `Recombination{AlphabetExctractor}`.
+Constructs `Recombination{AlphabetExtractor}`.
 
 # Keywords
 - `n::Union{Int,Nothing}`: If not `nothing`, `n` sequences will be sampled randomly from the recombined mutants.
@@ -28,7 +28,7 @@ end
 
 Recombination{T}(alphabet_extractor::T; n=nothing) where {T} = Recombination(alphabet_extractor, n)
 Recombination(alphabet_extractor::AbstractAlphabetExtractor; n=nothing) = Recombination(alphabet_extractor, n)
-Recombination(; n=nothing) = Recombination(AlphabetExctractor(); n)
+Recombination(; n=nothing) = Recombination(AlphabetExtractor(); n)
 
 function (m::Recombination)(parents::AbstractVector{Vector{Char}})
     @assert DESilico.same_length_sequences(parents)

test/unit/alphabet_extractor/alphabet_extractor.jl

@@ -1,6 +1,6 @@
 @testset "alphabet_extractor.jl" begin
-    ae = DESilico.AlphabetExctractor()
-    @test typeof(ae) == DESilico.AlphabetExctractor
+    ae = DESilico.AlphabetExtractor()
+    @test typeof(ae) == DESilico.AlphabetExtractor
 
     parents = [
         ['A', 'A', 'A'],

test/unit/mutagenesis/recombination.jl

@@ -17,49 +17,49 @@
 
     @testset "Constructors" begin
         m = DESilico.Recombination()
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test isnothing(m.n)
 
-        ae = DESilico.AlphabetExctractor()
+        ae = DESilico.AlphabetExtractor()
         m = DESilico.Recombination(ae)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test isnothing(m.n)
 
-        ae = DESilico.AlphabetExctractor()
-        m = DESilico.Recombination{DESilico.AlphabetExctractor}(ae)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        ae = DESilico.AlphabetExtractor()
+        m = DESilico.Recombination{DESilico.AlphabetExtractor}(ae)
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test isnothing(m.n)
 
         m = DESilico.Recombination(; n=3)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test m.n == 3
 
-        ae = DESilico.AlphabetExctractor()
+        ae = DESilico.AlphabetExtractor()
         m = DESilico.Recombination(ae, 3)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test m.n == 3
 
-        ae = DESilico.AlphabetExctractor()
+        ae = DESilico.AlphabetExtractor()
         m = DESilico.Recombination(ae; n=3)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test m.n == 3
 
-        ae = DESilico.AlphabetExctractor()
-        m = DESilico.Recombination{DESilico.AlphabetExctractor}(ae, 3)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        ae = DESilico.AlphabetExtractor()
+        m = DESilico.Recombination{DESilico.AlphabetExtractor}(ae, 3)
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test m.n == 3
 
-        ae = DESilico.AlphabetExctractor()
-        m = DESilico.Recombination{DESilico.AlphabetExctractor}(ae; n=3)
-        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExctractor}
-        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExctractor
+        ae = DESilico.AlphabetExtractor()
+        m = DESilico.Recombination{DESilico.AlphabetExtractor}(ae; n=3)
+        @test typeof(m) == DESilico.Recombination{DESilico.AlphabetExtractor}
+        @test typeof(m.alphabet_extractor) == DESilico.AlphabetExtractor
         @test m.n == 3
     end