Changelog

0.6.2 (2023-07-06)

Bug Fixes

bug where mem_mb is never read (#34) (be7b4b2)

0.6.1 (2023-06-29)

Bug Fixes

set default memory for get_mem() to 1/5 of 1GB (#32) (999240e)

0.6.0 (2023-06-21)

Features

allow to configure the param name parsed by get_samtools_opts (#30) (84aa151)

Bug Fixes

fix bug when short arguments are contained in long arguments (#28) (6b9b6db)

0.5.3 (2023-03-14)

Bug Fixes

check for input: index="", when input: regions="" is specified, as the --regions-file option requires an index (#26) (7e11735)

0.5.2 (2023-01-09)

Bug Fixes

introduce default 20% deduction from resources.mem_mb and override via params.java_mem_overhead_mv (#24) (71403bd)

0.5.1 (2022-12-09)

Bug Fixes

typo when checking for regions file in params.extra (#22) (fa70493)

0.5.0 (2022-08-16)

Features

Adding parsing of reference (#20) (5c259f5)
Regions, samples and targets in get_bcftools_opts (#19) (e916c8b)

0.4.1 (2022-06-30)

Bug Fixes

fixed missing return values (#15) (c6f0fa7)
rename argument in function 'infer_out_format' (#17) (93d25fa)

0.4.0 (2022-04-25)

Features

function for output format inference and disable temp folder (#13) (9b88bdd)

0.3.1 (2022-01-17)

Bug Fixes

migrate publishing to release please (60a2665)