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Bug: conda is not properly installed with v8.20.6 docker build #38

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ezherman opened this issue Oct 8, 2024 · 1 comment
Open

Bug: conda is not properly installed with v8.20.6 docker build #38

ezherman opened this issue Oct 8, 2024 · 1 comment

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@ezherman
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ezherman commented Oct 8, 2024

I believe I have encountered an issue similar to #37.

Since the latest Snakemake update to v8.20.6, my github actions is failing with:

Building DAG of jobs...
/usr/bin/bash: line 1: conda: command not found

Setting Snakemake to v8.20.5 through this branch resolves the issue.
@cademirch cademirch mentioned this issue Oct 11, 2024
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@durr1602
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can you indicate the version of github actions you are using? it works for me with snakemake/[email protected]

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@ezherman @durr1602