v4.0.1

4.0.1 (2023-06-14)

Bug Fixes

• update varlociraptor (#244) (361c9ee)

Performance Improvements

• update to latest datavzrd (#245) (d4ee98a)

v4.0.0

4.0.0 (2023-06-12)

⚠ BREAKING CHANGES

• use lowercase for all header names in report tables (#238)

Features

• add binned vaf column for sorting by allele frequency (#240) (a428b30)
• update observation plot to horizontal stacked bars with annotation variable checkbox (#242) (762d3be)
• use lowercase for all header names in report tables (#238) (f142d32)
• use MANE+clinical for selecting representative transcripts (#235) (0af4ba0)

Bug Fixes

• fix mixed up VEP and VEP-cache versions (#241) (86ccece)
• observations plots (#243) (615d9cc)

v3.24.3

3.24.3 (2023-05-09)

Bug Fixes

• use annotated calls (#234) (0821a01)

v3.24.2

3.24.2 (2023-05-05)

Bug Fixes

• update to latest snpsift, which fixes a bug that before led to loosing some variants (#232) (5586986)

v3.24.1

3.24.1 (2023-04-28)

Bug Fixes

• several fixes (#227) (4c5ab31)
• update datavzrd to 2.18.5 (fixes for empty callsets) (#229) (f63479e)

Performance Improvements

• use varlociraptor 8.1 (#228) (e29d9c3)

v3.24.0

3.24.0 (2023-04-24)

Features

• Support new varlociraptor 8.0 observations (#225) (925f736)

v3.23.1

3.23.1 (2023-04-17)

Bug Fixes

• fix vembrane aux (#223) (245366c)

v3.23.0

3.23.0 (2023-04-13)

Features

• handle umis (#213) (61c54e0)
• Improved handling of custom annotation fields (#221) (540f993)

Bug Fixes

• prenthesize combined filter expressions (#214) (fae1b0c)
• update mark_duplicates to newest wrapper syntax (#217) (9d3dd30)

v3.22.0

3.22.0 (2023-03-01)

Features

• Add datavzrd fields (#209) (142ead7)

Bug Fixes

• explicitly use categorical type for chi2 testing (#210) (079c756)
• use varlociraptor 6.0 with its new smart FDR control. This leads to improved filtration results with less false negatives (#212) (cb00c33)

v3.21.1

3.21.1 (2023-02-17)

Bug Fixes

• fix typo when retrieving candidate filter expression (dd1e661)