From add224c5e02f3b7c6b9665b0cebae267c2e7b45d Mon Sep 17 00:00:00 2001 From: Terence Li Date: Mon, 5 Oct 2020 15:22:15 -0700 Subject: [PATCH] removed header that required users to have htslib by default. added deprecated header to the header-guarded bam code --- src/load_data_for_complexity.cpp | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/load_data_for_complexity.cpp b/src/load_data_for_complexity.cpp index 876ada2..24acdbb 100644 --- a/src/load_data_for_complexity.cpp +++ b/src/load_data_for_complexity.cpp @@ -27,7 +27,6 @@ #include "GenomicRegion.hpp" #include "MappedRead.hpp" -#include "htslib_wrapper_deprecated.hpp" using std::string; using std::vector; @@ -183,7 +182,7 @@ empty_pq(GenomicRegion &curr_gr, GenomicRegion &prev_gr, #ifdef HAVE_HTSLIB // switching dependency on bamtools to samtools #include - +#include "htslib_wrapper_deprecated.hpp" size_t load_counts_BAM_se(const string &input_file_name,