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auto_survey/README.md

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+---
+license: mit
+title: '文献调研神器'
+python_version: 3.10.10
+---
+
+
+# 文献调研神器
+
+这个项目旨在轻松快捷的调研相关文献! 具体包含如下功能:
+* 自动搜索相关文献, 提供真实有出处的引用.
+* 自动生成LaTeX格式，markdown格式的调研结果.
+
+
+# 部署方法
+1. 安装依赖：
+```angular2html
+pip install -r requirements.txt
+```
+3. 在环境变量中设定OPENAI_API_KEY.
+4. 编辑`main.py`以自定义论文标题, 然后运行
+```angular2html
+python main.py
+```
+所得到的结果结果会保存在 outputs 目录的对应文件夹下，文件夹以运行main.py的时间为名。 用户可以在能运行tex文件的地方直接运行main.tex
+得到相应的pdf文件， 或者直接查看survey.md文件即可. 
+
+
+
+# 参考与学习
+代码主要参考了如下优秀项目：
+
+https://github.com/CCCBora/auto-draft

auto_survey/main.py

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+import json
+import os.path
+import logging
+import time
+from langchain.vectorstores import FAISS
+from langchain import PromptTemplate
+from utils.references import References
+from utils.knowledge import Knowledge
+from utils.file_operations import  make_archive, copy_templates
+from utils.tex_processing import create_copies
+from utils.gpt_interaction import GPTModel
+from utils.prompts import SYSTEM
+from utils.embeddings import EMBEDDINGS
+from utils.gpt_interaction import get_gpt_responses
+TOTAL_TOKENS = 0
+TOTAL_PROMPTS_TOKENS = 0
+TOTAL_COMPLETION_TOKENS = 0
+def log_usage(usage, generating_target, print_out=True):
+    global TOTAL_TOKENS
+    global TOTAL_PROMPTS_TOKENS
+    global TOTAL_COMPLETION_TOKENS
+
+    prompts_tokens = usage['prompt_tokens']
+    completion_tokens = usage['completion_tokens']
+    total_tokens = usage['total_tokens']
+
+    TOTAL_TOKENS += total_tokens
+    TOTAL_PROMPTS_TOKENS += prompts_tokens
+    TOTAL_COMPLETION_TOKENS += completion_tokens
+
+    message = f">>USAGE>> For generating {generating_target}, {total_tokens} tokens have been used " \
+              f"({prompts_tokens} for prompts; {completion_tokens} for completion). " \
+              f"{TOTAL_TOKENS} tokens have been used in total."
+    if print_out:
+        print(message)
+    logging.info(message)
+
+
+def _generation_setup(title,  template="Default",
+                      tldr=False, max_kw_refs=20, bib_refs=None, max_tokens_ref=2048,  # generating references
+                      knowledge_database=None, max_tokens_kd=2048, query_counts=10):
+
+    llm = GPTModel(model="gpt-3.5-turbo-16k")
+    bibtex_path, destination_folder = copy_templates(template, title)
+    logging.basicConfig(level=logging.INFO, filename=os.path.join(destination_folder, "generation.log"))
+
+    #generate key words
+    keywords, usage = llm(systems=SYSTEM["keywords"], prompts=title, return_json=True)
+    log_usage(usage, "keywords")
+    keywords = {keyword: max_kw_refs for keyword in keywords}
+    print("Keywords: \n", keywords)
+
+    #generate references
+    ref = References(title, bib_refs)
+    ref.collect_papers(keywords, tldr=tldr)
+    references = ref.to_prompts(max_tokens=max_tokens_ref)
+    all_paper_ids = ref.to_bibtex(bibtex_path)
+
+    #product domain knowledge
+    prompts = f"Title: {title}"
+    preliminaries_kw, _ = llm(systems=SYSTEM["preliminaries"], prompts=prompts)
+    # check if the database exists or not
+    db_path = f"utils/knowledge_databases/{knowledge_database}"
+    db_config_path = os.path.join(db_path, "db_meta.json")
+    db_index_path = os.path.join(db_path, "faiss_index")
+    if os.path.isdir(db_path):
+        try:
+            with open(db_config_path, "r", encoding="utf-8") as f:
+                db_config = json.load(f)
+            model_name = db_config["embedding_model"]
+            embeddings = EMBEDDINGS[model_name]
+            db = FAISS.load_local(db_index_path, embeddings)
+            knowledge = Knowledge(db=db)
+            knowledge.collect_knowledge(preliminaries_kw, max_query=query_counts)
+            domain_knowledge = knowledge.to_prompts(max_tokens_kd)
+        except Exception as e:
+            domain_knowledge=''
+    prompts = f"Title: {title}"
+    syetem_promot =  "You are an assistant designed to propose necessary components of an survey papers. Your response should follow the JSON format."
+    components, usage = llm(systems=syetem_promot, prompts=prompts, return_json=True)
+    log_usage(usage, "media")
+    print(f"The paper information has been initialized. References are saved to {bibtex_path}.")
+
+    paper = {}
+    paper["title"] = title
+    paper["references"] = references
+    paper["bibtex"] = bibtex_path
+    paper["components"] = components
+    paper["domain_knowledge"] = domain_knowledge
+    return paper, destination_folder, all_paper_ids
+
+
+def section_generation(paper, section, save_to_path, model, research_field="machine learning"):
+    """
+    The main pipeline of generating a section.
+        1. Generate prompts.
+        2. Get responses from AI assistant.
+        3. Extract the section text.
+        4. Save the text to .tex file.
+    :return usage
+    """
+
+    title = paper["title"]
+    references = paper["references"]
+    components = paper['components']
+    instruction = '- Discuss three to five main related fields to this paper. For each field, select five to ten key publications from references. For each reference, analyze its strengths and weaknesses in one or two sentences. Present the related works in a logical manner, often chronologically. Consider using a taxonomy or categorization to structure the discussion. Do not use \section{...} or \subsection{...}; use \paragraph{...} to list related fields.'
+
+
+    fundamental_subprompt = "Your task is to write the {section} section of the paper with the title '{title}'. This paper has the following content: {components}\n"
+    instruction_subprompt = "\n" \
+                            "Your response should follow the following instructions:\n" \
+                            "{instruction}\n"
+
+
+    ref_instruction_subprompt = "- Read references. " \
+                                "Every time you use information from the references, you need to appropriately cite it (using \citep or \citet)." \
+                                "For example of \citep, the sentence where you use information from lei2022adaptive \citep{{lei2022adaptive}}. " \
+                                "For example of \citet, \citet{{lei2022adaptive}} claims some information.\n" \
+                                "- Avoid citing the same reference in a same paragraph.\n" \
+                                "\n" \
+                                "References:\n" \
+                                "{references}"
+    output_subprompt = "Ensure that it can be directly compiled by LeTaX."
+
+    reivew_prompts = PromptTemplate(
+        input_variables=["title", "components", "instruction", "section", "references"],
+        template=fundamental_subprompt + instruction_subprompt + ref_instruction_subprompt + output_subprompt)
+    prompts = reivew_prompts.format(title=title,
+                                    components=components,
+                                    instruction=instruction,
+                                    section=section,
+                                    references=references)
+    SECTION_GENERATION_SYSTEM = PromptTemplate(input_variables=["research_field"],
+                                               template="You are an assistant designed to write academic papers in the field of {research_field} using LaTeX." )
+    output, usage = get_gpt_responses(SECTION_GENERATION_SYSTEM.format(research_field=research_field), prompts,
+                                      model=model, temperature=0.4)
+
+    output=output[25:]
+    tex_file = os.path.join(save_to_path, f"{section}.tex")
+    with open(tex_file, "w", encoding="utf-8") as f:
+        f.write(output)
+
+    use_md =True
+    use_chinese = True
+    if use_md:
+        system_md = 'You are an translator between the  LaTeX and .MD. here is a latex file where the content is: \n \n ' + output
+        prompts_md = 'you should transfer the latex content to the .MD format seriously, and pay attention to the correctness of the citation format (use the number). you should directly output the new content without anyoter replay. you should add reference papers at the end of the paper, and add line breaks between two reference papers. The Title should be ' + paper['title']
+        output_md, usage_md = get_gpt_responses(system_md, prompts_md,
+                                          model=model, temperature=0.4)
+        md_file = os.path.join(save_to_path, f"{'survey'}.md")
+        with open(md_file, "w", encoding="utf-8") as m:
+            m.write(output_md)
+
+        if use_chinese == True:
+            system_md_chi = 'You are an translator between the  english and chinese. here is a english file where the content is: \n \n ' + output
+            prompts_md_chi = 'you should transfer the english to chinese and dont change anything others. you should directly output the new content without anyoter replay. you should keep the reference papers unchanged.'
+
+            output_md_chi, usage_md_chi = get_gpt_responses(system_md_chi, prompts_md_chi,
+                                                    model=model, temperature=0.4)
+            md_file_chi = os.path.join(save_to_path, f"{'survey_chinese'}.md")
+            with open(md_file_chi, "w", encoding="utf-8") as c:
+                c.write(output_md_chi)
+    return usage
+
+
+def generate_draft(title,  tldr=True, max_kw_refs=20, bib_refs=None, max_tokens_ref=2048,
+                   knowledge_database=None, max_tokens_kd=2048, query_counts=10,
+                   section='related works', model="gpt-3.5-turbo-16k", template="Default"
+                   , save_zip=None):
+
+    print("================START================")
+    paper, destination_folder, _ = _generation_setup(title,  template, tldr, max_kw_refs, bib_refs,
+                                                     max_tokens_ref=max_tokens_ref, max_tokens_kd=max_tokens_kd,
+                                                     query_counts=query_counts,
+                                                     knowledge_database=knowledge_database)
+
+    # main components
+    print(f"================PROCESSING================")
+    usage = section_generation(paper, section, destination_folder, model=model)
+    log_usage(usage, section)
+    create_copies(destination_folder)
+    print("\nPROCESSING COMPLETE\n")
+    return make_archive(destination_folder, title+".zip")
+    print("draft has been generated in " + destination_folder)
+
+
+
+
+if __name__ == "__main__":
+    import openai
+
+
+    openai.api_key = "your key"
+    openai.api_base = 'https://api.openai.com/v1'
+
+    #openai.proxy = "socks5h://localhost:7890 # if use the vpn
+    target_title = "Reinforcement Learning for Robot Control"
+
+    generate_draft(target_title, knowledge_database="ml_textbook_test",max_kw_refs=20)
+