example4

Build a container based on Conda packages

Summary

This example shows how to use the Conda packages defined in Nextflow pipeline via the conda directive to assemble the corresponding containers on-demand and provision for the pipeline execution.

Config file

docker {
  enabled = true
  runOptions = '-u $(id -u):$(id -g)'
}

wave {
  strategy = 'conda'
}

The above setting instructs Wave to only use the conda directive to provision the pipeline containers, ignoring the use of the container directive and any Dockerfile(s).

Run it

run rnaseq-nf -with-wave