Roadmap

Modern C++

Sessions

• [05.09.] Introduction to Modern C++ [R]
• [19.09.] Construction, Initialisation, Destruction [H]
• [26,09.] Memory Management: RAII, pointer types, ... [R]
• [10.10.] References/Move Semantics: rule-of-five, ... [H]
• [17.10.] Variable Templates (replace Value-Metafunctions), constexpr, if-constexpr [H]
• [24.10.] Type Traits vs Metafunctions [H]
• [31.10.] Algorithms Library [R]
• [07.11.] Functional Programming: Lambda, Variadic Templates, Folding [R]
• [14.11.] Exceptions, exception-safety [R]
• [21.11.] Parallelism: SIMD, atomic, threads, OMP, TBB, ... [M+R]
• [28.11.] Concepts [H]

Idea:

• Monday 11 o'clock session with 15-30min presentation and Q&A
• mandatory for all SeqAn team members, optional for OpenMS
• Presumably start on 22nd of August.

SeqAn 3 design

General sessions (for everyone)

• general library design (how we bring all the stuff from above together) [H+R]
• documentation system [Jo+H]
• unit tests, CI, performance tests, Continuous Deployment, Static Code Analysis [R+S]
• Build System (external Apps) [H+M]

Module sessions (3-5 people) [] -> people who do take part in this session

• alphabet module and container module session [H+R+C+S
• align module session(s) [H+R+M
• index module session(s) [H+R+C+
• io sessions
  • system io (mmap, compression..) [H+R+T+S
  • sequence_io [H+R+S
  • align_io [H+R+T
  • annotation_io und rna_struct_io [H+R+Jö
• external libraries (GSL-like lib with correct license, Boost(subset)?, SIMD lib?, test or doc libs?) [