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Question regarding the zscore matrix #953

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Huimin721 opened this issue Feb 14, 2025 · 0 comments

Huimin721 commented Feb 14, 2025

Dear team,

Thanks so much for developing the outstanding tool. I have two qeustions regarding adata.uns['cell_type_nhood_enrichment']['zscore'].

Are the rownames and colnames of the zscore matrix
adata.obs["celltype"].cat.categories.tolist()
?
what is the difference between Acluster(row)--Bcluster(column) and Acluster(column)--Bcluster(row)?

Thanks so much and please let me know if this is not clear.

Best,
Huimin

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