AttributeError while writing zarr file with xenium.write()

[aasingh2]

Hi,

I am trying to read some Xenium data using the spatialdata_io library, following the steps in the tutorial here. However, I encountered an issue at the step where I am supposed to write the Xenium data as Zarr files. The error message suggests that there is no function called xenium.write()
Here is the line that throws the error:

xenium.write(zarr_path)

---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
Cell In[4], line 1
----> 1 xenium.write(zarr_path)

AttributeError: 'function' object has no attribute 'write'

I have already executed the from spatialdata_io import xenium step. Could you please help me understand why this is happening or if I need to call a different function?

Thanks !

[LLehner]

Hi, @aasingh2 thanks for using squidpy in combination with spatialdata!

The is due to a typo in the notebook, you can see the fixed version here. It should be sdata.write(zarr_path)

Seems like the docs haven't been updated yet.