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Extend monkeybread neighbourhood to include n>1 cells #905

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timtreis opened this issue Oct 29, 2024 · 1 comment
Open

Extend monkeybread neighbourhood to include n>1 cells #905

timtreis opened this issue Oct 29, 2024 · 1 comment
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enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release

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@timtreis
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Just discussed with @maiiashulman. Would be great to extend the monkeybread nhood niche def method to include a "distance" parameter. Default is 1 = closest touching cell, could extend to > 1 with weights.

@timtreis timtreis added enhancement ✨ New feature or request graph 🕸️ feature PR introduces a new feature squidpy2.0 Everything releated to a Squidpy 2.0 release labels Oct 29, 2024
@LLehner
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LLehner commented Nov 3, 2024

@timtreis Where exactly would this be applied (and why)? Before calculating the niches you need to calculate the spatial neighborhood graph, where you already decide on how many neighbors you want to include. Also why is it restricted to this one approach when essentially all methods we implemented make use of the neighborhood?

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Labels
enhancement ✨ New feature or request feature PR introduces a new feature graph 🕸️ squidpy2.0 Everything releated to a Squidpy 2.0 release
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