Update notebooks

[flying-sheep]

Updates:

• dask (chore): use read_elem_as_dask scanpy-tutorials#124 & Update dask notebook for anndata 0.11 & scanpy 1.11 scanpy-tutorials#137
• integrating-data-using-ingest Update ingest tutorial scanpy-tutorials#139
• paga-paul15 Fix PAGA tutorial scanpy-tutorials#136
• pbmc3k / clustering-2017 Add .copy() to raw assignment scanpy-tutorials#132

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 76.59%. Comparing base (d0adc25) to head (ff73cae).
Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #3349   +/-   ##
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  Coverage   76.59%   76.59%           
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  Files         111      111           
  Lines       12827    12827           
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  Hits         9825     9825           
  Misses       3002     3002