Merge pull request #33 from scipp/drop-py39

Drop Python 3.9 and update copier and dependencies

Author: jl-wynen

.copier-answers.yml

@@ -1,13 +1,13 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: '8422361'
+_commit: b264d7c
 _src_path: gh:scipp/copier_template
 description: Advanced uncertainty propagation with Scipp
-max_python: '3.11'
-min_python: '3.9'
+max_python: '3.12'
+min_python: '3.10'
 namespace_package: ''
 nightly_deps: scipp,plopp
 orgname: scipp
 prettyname: ScippUncertainty
 projectname: scippuncertainty
 related_projects: Scipp,Plopp
-year: 2023
+year: 2024

.github/workflows/ci.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: CI
 
 on:
@@ -24,15 +21,16 @@ jobs:
         run: |
           echo "min_python=$(cat .github/workflows/python-version-ci)" >> $GITHUB_OUTPUT
           echo "min_tox_env=py$(cat .github/workflows/python-version-ci | sed 's/\.//g')" >> $GITHUB_OUTPUT
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version-file: '.github/workflows/python-version-ci'
-      - run: python -m pip install --upgrade pip
-      - run: python -m pip install -r requirements/ci.txt
-      - run: tox -e static
-      - uses: stefanzweifel/git-auto-commit-action@v5
+      - uses: pre-commit/[email protected]
+        with:
+          extra_args: --all-files
+      - uses: pre-commit-ci/[email protected]
+        if: always()
         with:
-          commit_message: Apply automatic formatting
+          msg: Apply automatic formatting
 
   tests:
     name: Tests
@@ -54,4 +52,5 @@ jobs:
     uses: ./.github/workflows/docs.yml
     with:
       publish: false
+      linkcheck: ${{ contains(matrix.variant.os, 'ubuntu') && github.ref == 'refs/heads/main' }}
       branch: ${{ github.head_ref == '' && github.ref_name || github.head_ref }}

.github/workflows/docs.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Docs
 
 on:
@@ -32,6 +29,11 @@ on:
         default: ''
         required: false
         type: string
+      linkcheck:
+        description: 'Run the link checker. If not set the link checker will not be run.'
+        default: false
+        required: false
+        type: boolean
 
 env:
   VERSION: ${{ inputs.version }}
@@ -42,11 +44,12 @@ jobs:
     runs-on: 'ubuntu-22.04'
     steps:
       - run: sudo apt install --yes graphviz pandoc
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           ref: ${{ inputs.branch == '' && github.ref_name || inputs.branch }}
+          repository: ${{ github.event.pull_request.head.repo.full_name }}
           fetch-depth: 0  # history required so cmake can determine version
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version-file: '.github/workflows/python-version-ci'
       - run: python -m pip install --upgrade pip
@@ -55,15 +58,16 @@ jobs:
         if: ${{ inputs.version != '' }}
       - run: tox -e docs
         if: ${{ inputs.version == '' }}
-      - uses: actions/upload-artifact@v3
+      - run: tox -e linkcheck
+        if: ${{ inputs.linkcheck }}
+      - uses: actions/upload-artifact@v4
         with:
           name: docs_html
           path: html/
 
-      - uses: JamesIves/github-pages-deploy-action@v4.4.3
+      - uses: JamesIves/github-pages-deploy-action@v4.6.1
         if: ${{ inputs.publish }}
         with:
           branch: gh-pages
           folder: html
           single-commit: true
-          ssh-key: ${{ secrets.GH_PAGES_DEPLOY_KEY }}

.github/workflows/nightly_at_main.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Nightly test at main branch
 
 on:

.github/workflows/nightly_at_release.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Nightly tests at latest release
 
 on:

.github/workflows/python-version-ci

@@ -1 +1 @@
-3.9
+3.10

.github/workflows/release.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Release
 
 on:
@@ -18,7 +15,7 @@ jobs:
     runs-on: 'ubuntu-22.04'
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           submodules: true
           fetch-depth: 0  # history required so setuptools_scm can determine version
@@ -31,7 +28,7 @@ jobs:
             boa
       - run: conda mambabuild --channel conda-forge --channel scipp --no-anaconda-upload --override-channels --output-folder conda/package conda
 
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         with:
           name: conda-package-noarch
           path: conda/package/noarch/*.tar.bz2
@@ -41,11 +38,11 @@ jobs:
     runs-on: 'ubuntu-22.04'
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # history required so setuptools_scm can determine version
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version-file: '.github/workflows/python-version-ci'
 
@@ -56,7 +53,7 @@ jobs:
         run: python -m build
 
       - name: Upload wheels
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: dist
           path: dist
@@ -70,8 +67,8 @@ jobs:
       id-token: write
     if: github.event_name == 'release' && github.event.action == 'published'
     steps:
-      - uses: actions/download-artifact@v3
-      - uses: pypa/[email protected].10
+      - uses: actions/download-artifact@v4
+      - uses: pypa/[email protected].14
 
   upload_conda:
     name: Deploy Conda
@@ -80,7 +77,7 @@ jobs:
     if: github.event_name == 'release' && github.event.action == 'published'
 
     steps:
-      - uses: actions/download-artifact@v3
+      - uses: actions/download-artifact@v4
       - uses: mamba-org/setup-micromamba@v1
         with:
           environment-name: upload-env
@@ -104,7 +101,7 @@ jobs:
     permissions:
       contents: write  # This is needed so that the action can upload the asset
     steps:
-    - uses: actions/download-artifact@v3
+    - uses: actions/download-artifact@v4
     - name: Zip documentation
       run: |
         mv docs_html documentation-${{ github.ref_name }}

.github/workflows/test.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Test
 
 on:
@@ -48,16 +45,16 @@ jobs:
     runs-on: ${{ inputs.os-variant }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           ref: ${{ inputs.checkout_ref }}
-      - uses: actions/setup-python@v3
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ inputs.python-version }}
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r ${{ inputs.pip-recipe }}
       - run: tox -e ${{ inputs.tox-env }}
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         if: ${{ inputs.coverage-report }}
         with:
           name: CoverageReport

.github/workflows/unpinned.yml

@@ -1,6 +1,3 @@
-# SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
-
 name: Unpinned tests at latest release
 
 on:

.gitignore

@@ -7,6 +7,9 @@ html
 
 *.sw?
 
+# Environments
+venv
+
 # Caches
 .clangd/
 *.ipynb_checkpoints
@@ -34,3 +37,4 @@ docs/generated/
 *.raw
 *.cif
 *.rcif
+*.ort