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Failed to make first seed. Cannot continue #91

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glinchan opened this issue Jun 20, 2019 · 3 comments
Open

Failed to make first seed. Cannot continue #91

glinchan opened this issue Jun 20, 2019 · 3 comments

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@glinchan
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I am running into the error
"Failed to make first seed. Cannot continue"

I am running on mac with the command

ulimit -n 2048; iva --threads 8 -f read1_val_1.fq.gz -r read2_val_2.fq.gz Assembly

@homonecloco
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Any hints on how to solve this? I'm getting the same issue

@homonecloco
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My info.txt file is:

/usr/local/bin/iva --trimmomatic /Trimmomatic-0.38/trimmomatic-0.38.jar --adapters /base/adapters.fasta -f /base/Reads/CiervoP4_S36_R1_001.fastq.gz -r /base/Reads/CiervoP4_S36_R2_001.fastq.gz /base/01_assemblies//asm_CiervoP4_S36
IVA version 1.0.8
Using kmc version 3.0.0
Using kmc_dump version 3.0.0
Using nucmer version 3.1
Using samtools version 1.3
Using smalt version 0.7.6
Failed to make first seed. Cannot continue

Using the docker image

@vera-rykalina
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The same thing at my end. Looks there won't be any update here.

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3 participants