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Add description of purpose of --assembler_thread
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HarryHung committed Mar 13, 2024
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Expand Up @@ -210,6 +210,8 @@ The pipeline is compatible with [Launchpad](https://help.tower.nf/23.2/launch/la
| `--depth` | Any integer or float value<br />(Default: `20.00`) | Minimum sequencing depth to pass Assembly QC. |
## Assembly
> ℹ️ The output of SPAdes-based assembler is deterministics for a given count of threads. Hence, using `--assembler_thread` with a specific value can guarantee the generated assemblies will be reproducible for others using the same value.
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| Option | Values | Description |
| --- | ---| --- |
| `--assembler` | `"shovill"` or `"unicycler"`<br />(Default: `"shovill"`)| Using which SPAdes-based assembler to assemble the reads. |
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