Temp work dir stays in pipeline directory

Former-commit-id: 335f86b
sanger-pathogens · Mar 8, 2023 · 080ca18 · 080ca18
1 parent 9011f80
commit 080ca18
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/run_pipeline b/run_pipeline
@@ -4,4 +4,4 @@
 
 pipelineDir=$(dirname -- "$(readlink -f -- "$0")")
 
-$pipelineDir/nextflow -C $pipelineDir/nextflow.config run $pipelineDir/main.nf "$@"
+$pipelineDir/nextflow -C $pipelineDir/nextflow.config run -w $pipelineDir/work $pipelineDir/main.nf "$@"