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Mummer error #80

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koushik1989 opened this issue Jun 1, 2019 · 1 comment
Open

Mummer error #80

koushik1989 opened this issue Jun 1, 2019 · 1 comment

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@koushik1989
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ERROR: mummer and/or mgaps returned non-zero
ERROR: Could not parse delta file, nucmer.delta
Hi, I am getting this error while running ABACAS with the following params.
$ perl abacas.1.3.1.pl -b -N -i 50 -v 50 -p nucmer -m -o -r -q

could anyone suggest where I am going wrong?
error no: 400
ERROR: Could not parse delta file, nucmer.filtered.delta
error no: 402
Use of uninitialized value in addition (+) at abacas.1.3.1.pl line 1001.
Total contigs = 0
Use of uninitialized value $id in print at abacas.1.3.1.pl line 1013.
Use of uninitialized value $id in print at abacas.1.3.1.pl line 1014.
Use of uninitialized value $id in print at abacas.1.3.1.pl line 1015.
Use of uninitialized value $id in print at abacas.1.3.1.pl line 1178.
FINISHED CONTIG ORDERING

@cecile00
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cecile00 commented Dec 5, 2020

More than a year later... But I'm having the same problem here.

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