samtools 1.18
htslib-plugins: 201712
Running the following (which is from one of our test suites which passes on iRODS 4.2.7, 4.2.11 and 4.2.12) fails in iRODS >4.3.0
samtools view -C -T ./t/data/aln_data_object/test_ref.fa -o irods:/testZone/home/irods/Illumina::AlnDataObjectTest.53621.19/7915_5\#0.cram ./t/data/aln_data_object/7915_5\#0.sam
We see:
'samtools: /opt/irods-externals/boost1.81.0-0/include/boost/smart_ptr/shared_ptr.hpp:783: typename boost::detail::sp_member_access<T>::type boost::shared_ptr<irods::network>::operator->() const [T = irods::network]: Assertion `px != 0' failed.'
The client and server are both >4.3.0, built from the 4-3-stable iRODS branch. We have Docker containers of the client/server combo exhibiting the issue, should anyone want to reproduce this:
ghcr.io/wtsi-npg/ub-22.04-irods-4.3-nightly:4.3
ghcr.io/wtsi-npg/ub-22.04-irods-clients-4.3-nightly:4.3
These contain unofficial Debian package builds created with RENCI's iRODS development environment which we're using to get ahead of potential issues with future iRODS releases, before they impact us.
Thanks.
samtools 1.18
htslib-plugins: 201712
Running the following (which is from one of our test suites which passes on iRODS 4.2.7, 4.2.11 and 4.2.12) fails in iRODS >4.3.0
We see:
The client and server are both >4.3.0, built from the 4-3-stable iRODS branch. We have Docker containers of the client/server combo exhibiting the issue, should anyone want to reproduce this:
ghcr.io/wtsi-npg/ub-22.04-irods-4.3-nightly:4.3
ghcr.io/wtsi-npg/ub-22.04-irods-clients-4.3-nightly:4.3
These contain unofficial Debian package builds created with RENCI's iRODS development environment which we're using to get ahead of potential issues with future iRODS releases, before they impact us.
Thanks.