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Try changing auto-sync to yes and running (as root, or via sudo) emaint sync --repo gentoo.
Does that successfully update your tree?
PS /usr/portage has migrated to /var/db/repos/gentoo, but as far as I know using the old paths shouldn't break anything.
genup was working fine until a few months ago.
Now I keep seeing messages like in genup's log:
genup -v -n gives:
genup.log
The text was updated successfully, but these errors were encountered: