Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Progeny pvals #122

Closed
nicolebussola opened this issue May 14, 2024 · 1 comment
Closed

Progeny pvals #122

nicolebussola opened this issue May 14, 2024 · 1 comment
Assignees
@PauBadiaM
Labels
question User question: anything that's not obviously a bug

Comments

@nicolebussola
Copy link

Hi, first of all thank you for this great tool. I was following the tutorial for footprint enrichment with PROGENy; the pvals outpupt by the mlm model are not "checked" but ideally I should consider a pathway to be active/inactive if the corresponding pvalue is significant, is that correct?
@nicolebussola nicolebussola added the question User question: anything that's not obviously a bug label May 14, 2024
@PauBadiaM PauBadiaM self-assigned this May 15, 2024
@PauBadiaM
Copy link
Collaborator

Hi @nicolebussola,

Thanks! Indeed, you can check if the corresponding p-value is significant to filter pathways.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@PauBadiaM PauBadiaM

Labels
question User question: anything that's not obviously a bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@nicolebussola @PauBadiaM