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Cargo.toml
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Cargo.toml
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[package]
name = "dbgphmm"
version = "1.0.0"
authors = ["Ryo Nakabayashi <[email protected]>"]
edition = "2018"
build = "build.rs"
[lib]
name = "dbgphmm"
crate-type = ["cdylib", "rlib"]
[features]
default = ["ndarray-linalg/openblas-system"]
python = ["pyo3"]
intel = ["ndarray-linalg/intel-mkl-system"]
[profile.release]
debug = 1
[dev-dependencies]
test-case = "1.2.3"
tempfile = "3"
[dependencies]
bio = "*"
rand = "0.8"
rand_xoshiro = "*"
approx = "*"
arrayvec = { version = "*", features = ["serde"] }
fnv = "1.0.3"
clap = { version = "3.0.0-beta.2", features = ["derive"] }
log = "0.4"
env_logger = "0.8.4"
petgraph_algos = { git = "https://github.com/ryought/petgraph_algos" }
rustflow = { git = "https://github.com/ryought/rustflow" }
# rustflow = { path = "../rustflow" }
sparsevec = { git = "https://github.com/ryought/sparsevec" }
libm = "*"
histo = "0.1.0"
rayon = "*"
serde = "*"
serde_json = "1.0"
serde_with = "1.10.0"
itertools = "*"
jemallocator = "0.3.0"
jemalloc-ctl = "*"
petgraph = { version = "0.6.0", features = ["serde-1"] }
derive-new = "0.5"
fixedbitset = "*"
# below setting does not work in mac
# pyo3 = { version = "0.17.1", features = ["extension-module"] }
pyo3 = { version = "0.17.1", optional = true }
chrono = "*"
indicatif = { version = "*", features = ["rayon"] }
once_cell = "*"
flate2 = "1.0.25"
ndarray = "*"
ndarray-linalg = { version = "*", default-features = false }
num-traits = "*"
[package.metadata.maturin]
# /python/dbgphmm as root of python module
python-source = "python"