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Seek/Tell for BGZF Module #416

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rmhubley opened this issue Jan 10, 2024 · 0 comments
Open

Seek/Tell for BGZF Module #416

rmhubley opened this issue Jan 10, 2024 · 0 comments

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@rmhubley
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The bgzf reader/writer implemented here is super fast, however it appears (perhaps I am missing something in the docs) to not expose the full bgzf.c functionality provided by htslib. Specifically the bgzf_useek() and bgzf_utell() functionality. These are essential for using bgzf files in-place. I realize that the Noodles reimplementation of the bgzf module does support them, however currently the Rust port is a less efficient reader/writer than the C implementation.

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