Skip to content

Commit b4cc7a3

Browse files
vsochvsoch
authored
Merge pull request #413 from rseng/update/software-2025-03-09
Update from update/software-2025-03-09
2 parents d55a9d3 + 9bcb7c5 commit b4cc7a3

File tree

84 files changed

+9545
-2
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

84 files changed

+9545
-2
lines changed

‎database/github/BiostatOmics/Coxmos/metadata.json

Lines changed: 39 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,39 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/BiostatOmics/Coxmos",
4+
"url": "https://github.com/BiostatOmics/Coxmos",
5+
"data": {
6+
"name": "Coxmos",
7+
"url": "https://github.com/BiostatOmics/Coxmos",
8+
"full_name": "BiostatOmics/Coxmos",
9+
"html_url": "https://github.com/BiostatOmics/Coxmos",
10+
"private": false,
11+
"description": null,
12+
"created_at": "2024-03-11T13:27:00Z",
13+
"updated_at": "2025-03-05T16:02:36Z",
14+
"clone_url": "https://github.com/BiostatOmics/Coxmos.git",
15+
"homepage": null,
16+
"size": 63931,
17+
"stargazers_count": 1,
18+
"watchers_count": 1,
19+
"language": "HTML",
20+
"open_issues_count": 0,
21+
"license": {
22+
"key": "cc-by-4.0",
23+
"name": "Creative Commons Attribution 4.0 International",
24+
"spdx_id": "CC-BY-4.0",
25+
"url": "https://api.github.com/licenses/cc-by-4.0",
26+
"node_id": "MDc6TGljZW5zZTI1"
27+
},
28+
"subscribers_count": 0,
29+
"owner": {
30+
"html_url": "https://github.com/BiostatOmics",
31+
"avatar_url": "https://avatars.githubusercontent.com/u/161608679?v=4",
32+
"login": "BiostatOmics",
33+
"type": "Organization"
34+
},
35+
"topics": [],
36+
"timestamp": "2025-03-09 00:40:52.108285",
37+
"avatar": "https://avatars.githubusercontent.com/u/161608679?v=4"
38+
}
39+
}

‎database/github/BiostatOmics/MORE/metadata.json

Lines changed: 28 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,28 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/BiostatOmics/MORE",
4+
"url": "https://github.com/BiostatOmics/MORE",
5+
"data": {
6+
"doi": "10.1101/2024.01.25.577162",
7+
"name": "MORE",
8+
"url": "https://github.com/BiostatOmics/MORE",
9+
"full_name": "BiostatOmics/MORE",
10+
"html_url": "https://github.com/BiostatOmics/MORE",
11+
"description": "Discover regulatory relationships for multi-omics data using regression models",
12+
"created_at": "2024-03-05T08:16:49Z",
13+
"updated_at": "2025-02-27T11:26:16Z",
14+
"clone_url": "https://github.com/BiostatOmics/MORE.git",
15+
"size": 197679,
16+
"stargazers_count": 3,
17+
"watchers_count": 3,
18+
"language": "HTML",
19+
"owner": {
20+
"html_url": "https://github.com/BiostatOmics",
21+
"avatar_url": "https://avatars.githubusercontent.com/u/161608679?v=4",
22+
"login": "BiostatOmics",
23+
"type": "Organization"
24+
},
25+
"timestamp": "2025-03-09 00:40:52.376952",
26+
"avatar": "https://avatars.githubusercontent.com/u/161608679?v=4"
27+
}
28+
}

‎database/github/CITCOM-project/CausalTestingFramework/metadata.json

Lines changed: 37 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,37 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/CITCOM-project/CausalTestingFramework",
4+
"url": "https://github.com/CITCOM-project/CausalTestingFramework",
5+
"data": {
6+
"doi": "https://doi.org/10.15131/shef.data.28539398.v1",
7+
"name": "CausalTestingFramework",
8+
"url": "https://github.com/CITCOM-project/CausalTestingFramework",
9+
"full_name": "CITCOM-project/CausalTestingFramework",
10+
"html_url": "https://github.com/CITCOM-project/CausalTestingFramework",
11+
"description": "A causal inference-driven framework for functional black-box testing of complex software.",
12+
"created_at": "2021-11-12T11:11:01Z",
13+
"updated_at": "2025-03-07T09:07:12Z",
14+
"clone_url": "https://github.com/CITCOM-project/CausalTestingFramework.git",
15+
"size": 4419,
16+
"stargazers_count": 14,
17+
"watchers_count": 14,
18+
"language": "Python",
19+
"open_issues_count": 37,
20+
"license": {
21+
"key": "mit",
22+
"name": "MIT License",
23+
"spdx_id": "MIT",
24+
"url": "https://api.github.com/licenses/mit",
25+
"node_id": "MDc6TGljZW5zZTEz"
26+
},
27+
"subscribers_count": 3,
28+
"owner": {
29+
"html_url": "https://github.com/CITCOM-project",
30+
"avatar_url": "https://avatars.githubusercontent.com/u/76901837?v=4",
31+
"login": "CITCOM-project",
32+
"type": "Organization"
33+
},
34+
"timestamp": "2025-03-09 00:40:31.200764",
35+
"avatar": "https://avatars.githubusercontent.com/u/76901837?v=4"
36+
}
37+
}

‎database/github/Cambridge-ICCS/FTorch/metadata.json

Lines changed: 48 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,48 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/Cambridge-ICCS/FTorch",
4+
"url": "https://github.com/Cambridge-ICCS/FTorch",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.14968153",
7+
"name": "FTorch",
8+
"url": "https://github.com/Cambridge-ICCS/FTorch",
9+
"full_name": "Cambridge-ICCS/FTorch",
10+
"html_url": "https://github.com/Cambridge-ICCS/FTorch",
11+
"description": "A library for directly calling PyTorch ML models from Fortran.",
12+
"created_at": "2022-10-14T15:56:34Z",
13+
"updated_at": "2025-03-08T15:00:20Z",
14+
"clone_url": "https://github.com/Cambridge-ICCS/FTorch.git",
15+
"homepage": "https://cambridge-iccs.github.io/FTorch/",
16+
"size": 7141,
17+
"stargazers_count": 103,
18+
"watchers_count": 103,
19+
"language": "Fortran",
20+
"open_issues_count": 58,
21+
"license": {
22+
"key": "mit",
23+
"name": "MIT License",
24+
"spdx_id": "MIT",
25+
"url": "https://api.github.com/licenses/mit",
26+
"node_id": "MDc6TGljZW5zZTEz"
27+
},
28+
"subscribers_count": 4,
29+
"owner": {
30+
"html_url": "https://github.com/Cambridge-ICCS",
31+
"avatar_url": "https://avatars.githubusercontent.com/u/97293575?v=4",
32+
"login": "Cambridge-ICCS",
33+
"type": "Organization"
34+
},
35+
"topics": [
36+
"fortran",
37+
"pytorch",
38+
"machine-learning",
39+
"deep-learning",
40+
"interoperability",
41+
"torch",
42+
"python",
43+
"hacktoberfest"
44+
],
45+
"timestamp": "2025-03-09 00:40:31.489506",
46+
"avatar": "https://avatars.githubusercontent.com/u/97293575?v=4"
47+
}
48+
}

‎database/github/ConesaLab/MOSim/metadata.json

Lines changed: 29 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/ConesaLab/MOSim",
4+
"url": "https://github.com/ConesaLab/MOSim",
5+
"data": {
6+
"doi": "10.1101/421834",
7+
"name": "MOSim",
8+
"url": "https://github.com/ConesaLab/MOSim",
9+
"full_name": "ConesaLab/MOSim",
10+
"html_url": "https://github.com/ConesaLab/MOSim",
11+
"description": "Bulk and single-cell Multi-Omics ground truth Simulator in R",
12+
"created_at": "2023-03-23T11:40:59Z",
13+
"updated_at": "2024-12-15T19:35:00Z",
14+
"clone_url": "https://github.com/ConesaLab/MOSim.git",
15+
"size": 55790,
16+
"stargazers_count": 9,
17+
"watchers_count": 9,
18+
"language": "R",
19+
"open_issues_count": 1,
20+
"owner": {
21+
"html_url": "https://github.com/ConesaLab",
22+
"avatar_url": "https://avatars.githubusercontent.com/u/29752440?v=4",
23+
"login": "ConesaLab",
24+
"type": "Organization"
25+
},
26+
"timestamp": "2025-03-09 00:40:52.951531",
27+
"avatar": "https://avatars.githubusercontent.com/u/29752440?v=4"
28+
}
29+
}

‎database/github/ConesaLab/MultiPower/metadata.json

Lines changed: 30 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,30 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/ConesaLab/MultiPower",
4+
"url": "https://github.com/ConesaLab/MultiPower",
5+
"data": {
6+
"doi": "10.1038/s41467-020-16937-8",
7+
"name": "MultiPower",
8+
"url": "https://github.com/ConesaLab/MultiPower",
9+
"full_name": "ConesaLab/MultiPower",
10+
"html_url": "https://github.com/ConesaLab/MultiPower",
11+
"description": "Statistical power studies for multi-omics experiments.",
12+
"created_at": "2020-01-31T11:43:05Z",
13+
"updated_at": "2025-01-18T20:01:48Z",
14+
"clone_url": "https://github.com/ConesaLab/MultiPower.git",
15+
"size": 2094,
16+
"stargazers_count": 30,
17+
"watchers_count": 30,
18+
"language": "R",
19+
"open_issues_count": 3,
20+
"subscribers_count": 7,
21+
"owner": {
22+
"html_url": "https://github.com/ConesaLab",
23+
"avatar_url": "https://avatars.githubusercontent.com/u/29752440?v=4",
24+
"login": "ConesaLab",
25+
"type": "Organization"
26+
},
27+
"timestamp": "2025-03-09 00:40:52.631741",
28+
"avatar": "https://avatars.githubusercontent.com/u/29752440?v=4"
29+
}
30+
}

‎database/github/IslasGECI/nerd/metadata.json

Lines changed: 35 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,35 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/IslasGECI/nerd",
4+
"url": "https://github.com/IslasGECI/nerd",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.14947594",
7+
"name": "nerd",
8+
"url": "https://github.com/IslasGECI/nerd",
9+
"full_name": "IslasGECI/nerd",
10+
"html_url": "https://github.com/IslasGECI/nerd",
11+
"description": "NERD: Numerical Estimation of Rodenticide Density",
12+
"created_at": "2020-07-17T01:10:21Z",
13+
"updated_at": "2025-03-04T00:38:08Z",
14+
"clone_url": "https://github.com/IslasGECI/nerd.git",
15+
"homepage": "https://doi.org/10.21105/joss.06736",
16+
"size": 56355,
17+
"language": "Jupyter Notebook",
18+
"open_issues_count": 3,
19+
"license": {
20+
"key": "agpl-3.0",
21+
"name": "GNU Affero General Public License v3.0",
22+
"spdx_id": "AGPL-3.0",
23+
"url": "https://api.github.com/licenses/agpl-3.0",
24+
"node_id": "MDc6TGljZW5zZTE="
25+
},
26+
"owner": {
27+
"html_url": "https://github.com/IslasGECI",
28+
"avatar_url": "https://avatars.githubusercontent.com/u/40274821?v=4",
29+
"login": "IslasGECI",
30+
"type": "Organization"
31+
},
32+
"timestamp": "2025-03-09 00:40:32.642818",
33+
"avatar": "https://avatars.githubusercontent.com/u/40274821?v=4"
34+
}
35+
}

‎database/github/JoshSchramm94/validateHOT/metadata.json

Lines changed: 33 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,33 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/JoshSchramm94/validateHOT",
4+
"url": "https://github.com/JoshSchramm94/validateHOT",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.14868050",
7+
"name": "validateHOT",
8+
"url": "https://github.com/JoshSchramm94/validateHOT",
9+
"full_name": "JoshSchramm94/validateHOT",
10+
"html_url": "https://github.com/JoshSchramm94/validateHOT",
11+
"description": "\ud83c\udfaf Validate your Holdout Task and other tools for preference measurement techniques",
12+
"created_at": "2023-03-10T09:04:36Z",
13+
"updated_at": "2025-03-07T17:19:57Z",
14+
"clone_url": "https://github.com/JoshSchramm94/validateHOT.git",
15+
"size": 3696,
16+
"language": "R",
17+
"license": {
18+
"key": "gpl-3.0",
19+
"name": "GNU General Public License v3.0",
20+
"spdx_id": "GPL-3.0",
21+
"url": "https://api.github.com/licenses/gpl-3.0",
22+
"node_id": "MDc6TGljZW5zZTk="
23+
},
24+
"owner": {
25+
"html_url": "https://github.com/JoshSchramm94",
26+
"avatar_url": "https://avatars.githubusercontent.com/u/93316398?v=4",
27+
"login": "JoshSchramm94",
28+
"type": "User"
29+
},
30+
"timestamp": "2025-03-09 00:40:32.359062",
31+
"avatar": "https://avatars.githubusercontent.com/u/93316398?v=4"
32+
}
33+
}

‎database/github/QuackenbushLab/NetworkDataCompanion/metadata.json

Lines changed: 37 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,37 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/QuackenbushLab/NetworkDataCompanion",
4+
"url": "https://github.com/QuackenbushLab/NetworkDataCompanion",
5+
"data": {
6+
"doi": "10.1101/2024.11.05.622163",
7+
"name": "NetworkDataCompanion",
8+
"url": "https://github.com/QuackenbushLab/NetworkDataCompanion",
9+
"full_name": "QuackenbushLab/NetworkDataCompanion",
10+
"html_url": "https://github.com/QuackenbushLab/NetworkDataCompanion",
11+
"description": "An R library of utilities for performing analyses on TCGA and GTEx data using the Network Zoo",
12+
"created_at": "2022-08-30T20:06:30Z",
13+
"updated_at": "2025-02-28T15:51:25Z",
14+
"clone_url": "https://github.com/QuackenbushLab/NetworkDataCompanion.git",
15+
"size": 5236,
16+
"stargazers_count": 6,
17+
"watchers_count": 6,
18+
"language": "HTML",
19+
"open_issues_count": 11,
20+
"license": {
21+
"key": "gpl-3.0",
22+
"name": "GNU General Public License v3.0",
23+
"spdx_id": "GPL-3.0",
24+
"url": "https://api.github.com/licenses/gpl-3.0",
25+
"node_id": "MDc6TGljZW5zZTk="
26+
},
27+
"subscribers_count": 3,
28+
"owner": {
29+
"html_url": "https://github.com/QuackenbushLab",
30+
"avatar_url": "https://avatars.githubusercontent.com/u/13573979?v=4",
31+
"login": "QuackenbushLab",
32+
"type": "Organization"
33+
},
34+
"timestamp": "2025-03-09 00:40:51.844459",
35+
"avatar": "https://avatars.githubusercontent.com/u/13573979?v=4"
36+
}
37+
}

‎database/github/StevenGolovkine/FDApy/metadata.json

Lines changed: 37 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,37 @@
1+
{
2+
"parser": "github",
3+
"uid": "github/StevenGolovkine/FDApy",
4+
"url": "https://github.com/StevenGolovkine/FDApy",
5+
"data": {
6+
"doi": "https://doi.org/10.5281/zenodo.14944699",
7+
"name": "FDApy",
8+
"url": "https://github.com/StevenGolovkine/FDApy",
9+
"full_name": "StevenGolovkine/FDApy",
10+
"html_url": "https://github.com/StevenGolovkine/FDApy",
11+
"description": "Python Package for Functional Data Analysis",
12+
"created_at": "2018-10-29T09:15:38Z",
13+
"updated_at": "2025-03-06T21:14:49Z",
14+
"clone_url": "https://github.com/StevenGolovkine/FDApy.git",
15+
"homepage": "https://fdapy.readthedocs.io/en/latest/",
16+
"size": 110173,
17+
"stargazers_count": 50,
18+
"watchers_count": 50,
19+
"language": "Python",
20+
"open_issues_count": 6,
21+
"license": {
22+
"key": "mit",
23+
"name": "MIT License",
24+
"spdx_id": "MIT",
25+
"url": "https://api.github.com/licenses/mit",
26+
"node_id": "MDc6TGljZW5zZTEz"
27+
},
28+
"owner": {
29+
"html_url": "https://github.com/StevenGolovkine",
30+
"avatar_url": "https://avatars.githubusercontent.com/u/22517192?v=4",
31+
"login": "StevenGolovkine",
32+
"type": "User"
33+
},
34+
"timestamp": "2025-03-09 00:40:31.732941",
35+
"avatar": "https://avatars.githubusercontent.com/u/22517192?v=4"
36+
}
37+
}

0 commit comments

Comments
 (0)