Skip to content

Searchlight memory issues #45

@PuddleJumper2018

Description

@PuddleJumper2018

Hi, I'm using this toolbox to perform searchlight:
It seems this line of code:
rsa.fmri.fMRISearchlight(fullBrainVols, binaryMasks_nS, models, betaCorrespondence, userOptions);

is chewing up 30GB of memory per participant (I have total of 34 ppts and one model so requires 1000GB in total) to process. We've already upgraded memory at the computing cluster once, but insufficiently. Can anyone advice on where does this function digest so much memory? What can we do to make it lightweight?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions