pyproject.toml

[project]
name = "velorama"
version = "0.0.3"
description = "Gene regulatory network inference for RNA velocity and pseudotime data"
authors = [
    { name = "Your Name" }
]
license = { text = "MIT" }
dependencies = [
    "numpy>=1.26.4",
    "scipy>=1.11.4",
    "pandas>=2.2.3",
    "scikit-learn>=1.5.2",
    "cellrank>=2.0.6",
    "scvelo>=0.3.2",
    "scanpy>=1.10.4",
    "anndata>=0.11.1",
    "torch==1.13.0",
    "ray[tune]==2.6.0",
    "matplotlib>=3.9.2",
    "h5py>=3.12.1",
    "tqdm>=4.67.1",
    "networkx>=3.4.2",
    "seaborn>=0.13.2",
    "statsmodels>=0.14.4",
    "schema_learn>=0.1.5.5",
    "umap-learn>=0.5.7"
]
requires-python = ">=3.10"

[build-system]
requires = [
    "setuptools>=75.1.0",
    "wheel>=0.44.0",
    "pip>=24.2",
    "build"
]
build-backend = "setuptools.build_meta"

[tool.setuptools]
packages = ["velorama"]
zip-safe = false

[project.scripts]
velorama = "velorama:execute_cmdline"