DESCRIPTION

Package: xcms
Version: 3.3.3
Date: 2018-08-30
Title: LC/MS and GC/MS Data Analysis
Author: Colin A. Smith <csmith@scripps.edu>,
    Ralf Tautenhahn <rtautenh@gmail.com>,
    Steffen Neumann <sneumann@ipb-halle.de>,
    Paul Benton <hpbenton@scripps.edu>,
    Christopher Conley <cjconley@ucdavis.edu>,
    Johannes Rainer <Johannes.Rainer@eurac.edu>
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Depends:
    R (>= 2.14.0),
    methods,
    Biobase,
    BiocParallel (>= 1.8.0),
    MSnbase (>= 2.5.10)
Imports:
    mzR (>= 2.13.1),
    BiocGenerics,
    ProtGenerics,
    lattice,
    RColorBrewer,
    plyr,
    RANN,
    multtest,
    MassSpecWavelet (>= 1.5.2),
    S4Vectors,
    robustbase
Suggests:
    BiocStyle,
    caTools,
    knitr (>= 1.1.0),
    faahKO,
    msdata,
    ncdf4,
    rgl,
    microbenchmark,
    testthat,
    pander,
    magrittr,
    MALDIquant
Enhances:
    Rgraphviz,
    Rmpi,
    XML
Description: Framework for processing and visualization of chromatographically
    separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF,
    mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted
    analyte profiling.
License: GPL (>= 2) + file LICENSE
URL: http://metlin.scripps.edu/download/ and https://github.com/sneumann/xcms
VignetteBuilder: knitr
BugReports: https://github.com/sneumann/xcms/issues/new
biocViews: MassSpectrometry, Metabolomics
RoxygenNote: 6.1.0
Collate: 
    'AllGenerics.R'
    'DataClasses.R'
    'Deprecated.R'
    'MPI.R'
    'c.R'
    'cwTools.R'
    'databases.R'
    'functions-MsFeatureData.R'
    'do_adjustRtime-functions.R'
    'functions-binning.R'
    'do_findChromPeaks-functions.R'
    'functions-Params.R'
    'do_groupChromPeaks-functions.R'
    'fastMatch.R'
    'functions-utils.R'
    'functions-IO.R'
    'functions-OnDiskMSnExp.R'
    'functions-ProcessHistory.R'
    'functions-XCMSnExp.R'
    'functions-normalization.R'
    'functions-xcmsEIC.R'
    'functions-xcmsFragments.R'
    'functions-xcmsRaw.R'
    'functions-xcmsSet.R'
    'init.R'
    'matchpeaks.R'
    'methods-Chromatogram.R'
    'methods-IO.R'
    'methods-MsFeatureData.R'
    'methods-OnDiskMSnExp.R'
    'methods-Params.R'
    'methods-ProcessHistory.R'
    'methods-XCMSnExp.R'
    'methods-xcmsEIC.R'
    'methods-xcmsFileSource.R'
    'methods-xcmsFragments.R'
    'methods-xcmsPeaks.R'
    'methods-xcmsRaw.R'
    'methods-xcmsSet.R'
    'models.R'
    'mzClust.R'
    'netCDF.R'
    'plotQC.R'
    'ramp.R'
    'specDist.R'
    'write.mzquantML.R'
    'writemzdata.R'
    'writemztab.R'
    'xcmsSource.R'
    'zzz.R'