From 7a650c7cf8eba7e6a426e7fb22586d53dc80f0d9 Mon Sep 17 00:00:00 2001
From: eitsupi <50911393+eitsupi@users.noreply.github.com>
Date: Mon, 10 Feb 2025 13:41:29 +0900
Subject: [PATCH] refactor!: remove files for `rocker/cuda`, `rocker/ml`, and
 `rocker/ml-verse` (#905)

Close #903
Close #756
---
 NEWS.md                                       |   7 +
 bakefiles/4.4.1.extra.docker-bake.json        | 105 -----------
 bakefiles/4.4.2.extra.docker-bake.json        | 177 ------------------
 build/scripts/generate-bakefiles.R            |  36 +---
 build/scripts/generate-dockerfiles.R          |   3 -
 build/scripts/generate-matrix.R               |   2 +-
 .../bakefiles/extra.docker-bake.json          |  40 +---
 .../templates/dockerfiles/cuda.Dockerfile.txt |  40 ----
 .../dockerfiles/ml-verse.Dockerfile.txt       |  71 -------
 build/templates/dockerfiles/ml.Dockerfile.txt |  64 -------
 dockerfiles/cuda_4.3.3.Dockerfile             |  33 ----
 dockerfiles/cuda_4.4.1.Dockerfile             |  40 ----
 dockerfiles/cuda_4.4.2.Dockerfile             |  40 ----
 dockerfiles/cuda_devel.Dockerfile             |  40 ----
 dockerfiles/ml-verse_4.3.3.Dockerfile         |  64 -------
 dockerfiles/ml-verse_4.4.1.Dockerfile         |  71 -------
 dockerfiles/ml-verse_4.4.2.Dockerfile         |  71 -------
 dockerfiles/ml-verse_devel.Dockerfile         |  71 -------
 dockerfiles/ml_4.3.3.Dockerfile               |  57 ------
 dockerfiles/ml_4.4.1.Dockerfile               |  64 -------
 dockerfiles/ml_4.4.2.Dockerfile               |  64 -------
 dockerfiles/ml_devel.Dockerfile               |  64 -------
 tests/rocker_scripts/matrix.json              |   9 +-
 23 files changed, 11 insertions(+), 1222 deletions(-)
 delete mode 100644 build/templates/dockerfiles/cuda.Dockerfile.txt
 delete mode 100644 build/templates/dockerfiles/ml-verse.Dockerfile.txt
 delete mode 100644 build/templates/dockerfiles/ml.Dockerfile.txt
 delete mode 100644 dockerfiles/cuda_4.3.3.Dockerfile
 delete mode 100644 dockerfiles/cuda_4.4.1.Dockerfile
 delete mode 100644 dockerfiles/cuda_4.4.2.Dockerfile
 delete mode 100644 dockerfiles/cuda_devel.Dockerfile
 delete mode 100644 dockerfiles/ml-verse_4.3.3.Dockerfile
 delete mode 100644 dockerfiles/ml-verse_4.4.1.Dockerfile
 delete mode 100644 dockerfiles/ml-verse_4.4.2.Dockerfile
 delete mode 100644 dockerfiles/ml-verse_devel.Dockerfile
 delete mode 100644 dockerfiles/ml_4.3.3.Dockerfile
 delete mode 100644 dockerfiles/ml_4.4.1.Dockerfile
 delete mode 100644 dockerfiles/ml_4.4.2.Dockerfile
 delete mode 100644 dockerfiles/ml_devel.Dockerfile

diff --git a/NEWS.md b/NEWS.md
index c9323b85..7e513f9c 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,12 @@
 # News
 
+## 2025-02
+
+### Changes in pre-built images
+
+- `rocker/cuda`, `rocker/ml`, and `rocker/ml-verse` images are no longer built from this repository.
+  See [#903](https://github.com/rocker-org/rocker-versioned2/issues/903) for background.
+
 ## 2024-12
 
 ### Changes in pre-built images
diff --git a/bakefiles/4.4.1.extra.docker-bake.json b/bakefiles/4.4.1.extra.docker-bake.json
index d3ba5f57..b6332fbb 100644
--- a/bakefiles/4.4.1.extra.docker-bake.json
+++ b/bakefiles/4.4.1.extra.docker-bake.json
@@ -4,9 +4,6 @@
       "default": [
         {
           "targets": [
-            "cuda",
-            "ml",
-            "ml-verse",
             "binder"
           ]
         }
@@ -17,15 +14,6 @@
             "binder"
           ]
         }
-      ],
-      "cuda-images": [
-        {
-          "targets": [
-            "cuda",
-            "ml",
-            "ml-verse"
-          ]
-        }
       ]
     }
   ],
@@ -56,99 +44,6 @@
         "docker.io/rocker/binder:4.4.1",
         "ghcr.io/rocker-org/binder:4.4.1"
       ]
-    },
-    "cuda": {
-      "dockerfile": "dockerfiles/cuda_4.4.1.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/cuda",
-        "org.opencontainers.image.description": "NVIDIA CUDA libraries added to Rocker image.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.1",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/cuda:4.4.1",
-        "ghcr.io/rocker-org/cuda:4.4.1"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.1",
-        "ghcr.io/rocker-org/cuda:4.4.1",
-        "docker.io/rocker/ml:4.4.1",
-        "ghcr.io/rocker-org/ml:4.4.1",
-        "docker.io/rocker/ml-verse:4.4.1",
-        "ghcr.io/rocker-org/ml-verse:4.4.1"
-      ]
-    },
-    "ml": {
-      "dockerfile": "dockerfiles/ml_4.4.1.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.1",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/ml:4.4.1",
-        "ghcr.io/rocker-org/ml:4.4.1"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.1",
-        "ghcr.io/rocker-org/cuda:4.4.1",
-        "docker.io/rocker/ml:4.4.1",
-        "ghcr.io/rocker-org/ml:4.4.1",
-        "docker.io/rocker/ml-verse:4.4.1",
-        "ghcr.io/rocker-org/ml-verse:4.4.1"
-      ]
-    },
-    "ml-verse": {
-      "dockerfile": "dockerfiles/ml-verse_4.4.1.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml-verse",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries, and many R packages.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.1",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/ml-verse:4.4.1",
-        "ghcr.io/rocker-org/ml-verse:4.4.1"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.1",
-        "ghcr.io/rocker-org/cuda:4.4.1",
-        "docker.io/rocker/ml:4.4.1",
-        "ghcr.io/rocker-org/ml:4.4.1",
-        "docker.io/rocker/ml-verse:4.4.1",
-        "ghcr.io/rocker-org/ml-verse:4.4.1"
-      ]
     }
   }
 }
diff --git a/bakefiles/4.4.2.extra.docker-bake.json b/bakefiles/4.4.2.extra.docker-bake.json
index 7f1ba93e..3041bdcc 100644
--- a/bakefiles/4.4.2.extra.docker-bake.json
+++ b/bakefiles/4.4.2.extra.docker-bake.json
@@ -4,9 +4,6 @@
       "default": [
         {
           "targets": [
-            "cuda",
-            "ml",
-            "ml-verse",
             "binder"
           ]
         }
@@ -17,15 +14,6 @@
             "binder"
           ]
         }
-      ],
-      "cuda-images": [
-        {
-          "targets": [
-            "cuda",
-            "ml",
-            "ml-verse"
-          ]
-        }
       ]
     }
   ],
@@ -68,171 +56,6 @@
         "docker.io/rocker/binder:latest",
         "ghcr.io/rocker-org/binder:latest"
       ]
-    },
-    "cuda": {
-      "dockerfile": "dockerfiles/cuda_4.4.2.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/cuda",
-        "org.opencontainers.image.description": "NVIDIA CUDA libraries added to Rocker image.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.2",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/cuda:4.4.2",
-        "ghcr.io/rocker-org/cuda:4.4.2",
-        "docker.io/rocker/cuda:4.4",
-        "ghcr.io/rocker-org/cuda:4.4",
-        "docker.io/rocker/cuda:4",
-        "ghcr.io/rocker-org/cuda:4",
-        "docker.io/rocker/cuda:latest",
-        "ghcr.io/rocker-org/cuda:latest"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.2",
-        "ghcr.io/rocker-org/cuda:4.4.2",
-        "docker.io/rocker/cuda:4.4",
-        "ghcr.io/rocker-org/cuda:4.4",
-        "docker.io/rocker/cuda:4",
-        "ghcr.io/rocker-org/cuda:4",
-        "docker.io/rocker/cuda:latest",
-        "ghcr.io/rocker-org/cuda:latest",
-        "docker.io/rocker/ml:4.4.2",
-        "ghcr.io/rocker-org/ml:4.4.2",
-        "docker.io/rocker/ml:4.4",
-        "ghcr.io/rocker-org/ml:4.4",
-        "docker.io/rocker/ml:4",
-        "ghcr.io/rocker-org/ml:4",
-        "docker.io/rocker/ml:latest",
-        "ghcr.io/rocker-org/ml:latest",
-        "docker.io/rocker/ml-verse:4.4.2",
-        "ghcr.io/rocker-org/ml-verse:4.4.2",
-        "docker.io/rocker/ml-verse:4.4",
-        "ghcr.io/rocker-org/ml-verse:4.4",
-        "docker.io/rocker/ml-verse:4",
-        "ghcr.io/rocker-org/ml-verse:4",
-        "docker.io/rocker/ml-verse:latest",
-        "ghcr.io/rocker-org/ml-verse:latest"
-      ]
-    },
-    "ml": {
-      "dockerfile": "dockerfiles/ml_4.4.2.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.2",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/ml:4.4.2",
-        "ghcr.io/rocker-org/ml:4.4.2",
-        "docker.io/rocker/ml:4.4",
-        "ghcr.io/rocker-org/ml:4.4",
-        "docker.io/rocker/ml:4",
-        "ghcr.io/rocker-org/ml:4",
-        "docker.io/rocker/ml:latest",
-        "ghcr.io/rocker-org/ml:latest"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.2",
-        "ghcr.io/rocker-org/cuda:4.4.2",
-        "docker.io/rocker/cuda:4.4",
-        "ghcr.io/rocker-org/cuda:4.4",
-        "docker.io/rocker/cuda:4",
-        "ghcr.io/rocker-org/cuda:4",
-        "docker.io/rocker/cuda:latest",
-        "ghcr.io/rocker-org/cuda:latest",
-        "docker.io/rocker/ml:4.4.2",
-        "ghcr.io/rocker-org/ml:4.4.2",
-        "docker.io/rocker/ml:4.4",
-        "ghcr.io/rocker-org/ml:4.4",
-        "docker.io/rocker/ml:4",
-        "ghcr.io/rocker-org/ml:4",
-        "docker.io/rocker/ml:latest",
-        "ghcr.io/rocker-org/ml:latest",
-        "docker.io/rocker/ml-verse:4.4.2",
-        "ghcr.io/rocker-org/ml-verse:4.4.2",
-        "docker.io/rocker/ml-verse:4.4",
-        "ghcr.io/rocker-org/ml-verse:4.4",
-        "docker.io/rocker/ml-verse:4",
-        "ghcr.io/rocker-org/ml-verse:4",
-        "docker.io/rocker/ml-verse:latest",
-        "ghcr.io/rocker-org/ml-verse:latest"
-      ]
-    },
-    "ml-verse": {
-      "dockerfile": "dockerfiles/ml-verse_4.4.2.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml-verse",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries, and many R packages.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-4.4.2",
-        "org.opencontainers.image.licenses": "GPL-2.0-or-later",
-        "org.opencontainers.image.source": "https://github.com/rocker-org/rocker-versioned2",
-        "org.opencontainers.image.vendor": "Rocker Project",
-        "org.opencontainers.image.authors": "Carl Boettiger <cboettig@ropensci.org>"
-      },
-      "platforms": [
-        "linux/amd64"
-      ],
-      "cache-to": [
-        "type=inline"
-      ],
-      "tags": [
-        "docker.io/rocker/ml-verse:4.4.2",
-        "ghcr.io/rocker-org/ml-verse:4.4.2",
-        "docker.io/rocker/ml-verse:4.4",
-        "ghcr.io/rocker-org/ml-verse:4.4",
-        "docker.io/rocker/ml-verse:4",
-        "ghcr.io/rocker-org/ml-verse:4",
-        "docker.io/rocker/ml-verse:latest",
-        "ghcr.io/rocker-org/ml-verse:latest"
-      ],
-      "cache-from": [
-        "docker.io/rocker/cuda:4.4.2",
-        "ghcr.io/rocker-org/cuda:4.4.2",
-        "docker.io/rocker/cuda:4.4",
-        "ghcr.io/rocker-org/cuda:4.4",
-        "docker.io/rocker/cuda:4",
-        "ghcr.io/rocker-org/cuda:4",
-        "docker.io/rocker/cuda:latest",
-        "ghcr.io/rocker-org/cuda:latest",
-        "docker.io/rocker/ml:4.4.2",
-        "ghcr.io/rocker-org/ml:4.4.2",
-        "docker.io/rocker/ml:4.4",
-        "ghcr.io/rocker-org/ml:4.4",
-        "docker.io/rocker/ml:4",
-        "ghcr.io/rocker-org/ml:4",
-        "docker.io/rocker/ml:latest",
-        "ghcr.io/rocker-org/ml:latest",
-        "docker.io/rocker/ml-verse:4.4.2",
-        "ghcr.io/rocker-org/ml-verse:4.4.2",
-        "docker.io/rocker/ml-verse:4.4",
-        "ghcr.io/rocker-org/ml-verse:4.4",
-        "docker.io/rocker/ml-verse:4",
-        "ghcr.io/rocker-org/ml-verse:4",
-        "docker.io/rocker/ml-verse:latest",
-        "ghcr.io/rocker-org/ml-verse:latest"
-      ]
     }
   }
 }
diff --git a/build/scripts/generate-bakefiles.R b/build/scripts/generate-bakefiles.R
index d787be98..e1cb6ca6 100644
--- a/build/scripts/generate-bakefiles.R
+++ b/build/scripts/generate-bakefiles.R
@@ -161,40 +161,6 @@ write_extra_bakefile <- function(..., bakefile_template, path_template) {
     generate_versioned_tags()
   bake_json_content$target$binder$`cache-from` <- bake_json_content$target$binder$tags
 
-  ## cuda
-  bake_json_content$target$`cuda`$labels <- c(
-    bake_json_content$target$`cuda`$labels,
-    default_labels
-  )
-  bake_json_content$target$`cuda`$tags <- c("docker.io/rocker/cuda", "ghcr.io/rocker-org/cuda") |>
-    generate_versioned_tags()
-
-  ## ml
-  bake_json_content$target$ml$labels <- c(
-    bake_json_content$target$ml$labels,
-    default_labels
-  )
-  bake_json_content$target$ml$tags <- c("docker.io/rocker/ml", "ghcr.io/rocker-org/ml") |>
-    generate_versioned_tags()
-
-  ## ml-verse
-  bake_json_content$target$`ml-verse`$labels <- c(
-    bake_json_content$target$`ml-verse`$labels,
-    default_labels
-  )
-  bake_json_content$target$`ml-verse`$tags <- c("docker.io/rocker/ml-verse", "ghcr.io/rocker-org/ml-verse") |>
-    generate_versioned_tags()
-
-  # Update cache-from
-  bake_json_content$target$`cuda`$`cache-from` <-
-    bake_json_content$target$ml$`cache-from` <-
-    bake_json_content$target$`ml-verse`$`cache-from` <-
-    c(
-      bake_json_content$target$`cuda`$tags,
-      bake_json_content$target$ml$tags,
-      bake_json_content$target$`ml-verse`$tags
-    )
-
   jsonlite::write_json(
     bake_json_content,
     path = glue::glue_data(
@@ -297,7 +263,7 @@ df_args |>
   )
 
 
-# binder and cuda bake files
+# binder bake files
 df_args |>
   purrr::pwalk(
     \(...) {
diff --git a/build/scripts/generate-dockerfiles.R b/build/scripts/generate-dockerfiles.R
index 584c641c..de4e88ee 100644
--- a/build/scripts/generate-dockerfiles.R
+++ b/build/scripts/generate-dockerfiles.R
@@ -61,9 +61,6 @@ tibble::tibble(
     "geospatial",
     "shiny",
     "shiny-verse",
-    "cuda",
-    "ml",
-    "ml-verse",
     "binder"
   )
 ) |>
diff --git a/build/scripts/generate-matrix.R b/build/scripts/generate-matrix.R
index 1b452238..c217ba5c 100644
--- a/build/scripts/generate-matrix.R
+++ b/build/scripts/generate-matrix.R
@@ -37,7 +37,7 @@ supported_versions |>
   write_matrix("build/matrix/latest.json")
 
 
-# binda and cuda
+# binder
 supported_versions |>
   utils::tail(2) |>
   write_matrix("build/matrix/latest-two.json")
diff --git a/build/templates/bakefiles/extra.docker-bake.json b/build/templates/bakefiles/extra.docker-bake.json
index d8315dcf..f9bf783a 100644
--- a/build/templates/bakefiles/extra.docker-bake.json
+++ b/build/templates/bakefiles/extra.docker-bake.json
@@ -3,18 +3,13 @@
     {
       "default": [
         {
-          "targets": ["cuda", "ml", "ml-verse", "binder"]
+          "targets": ["binder"]
         }
       ],
       "binder-images": [
         {
           "targets": ["binder"]
         }
-      ],
-      "cuda-images": [
-        {
-          "targets": ["cuda", "ml", "ml-verse"]
-        }
       ]
     }
   ],
@@ -29,39 +24,6 @@
       },
       "platforms": ["linux/amd64"],
       "cache-to": ["type=inline"]
-    },
-    "cuda": {
-      "dockerfile": "dockerfiles/cuda_{{r_version}}.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/cuda",
-        "org.opencontainers.image.description": "NVIDIA CUDA libraries added to Rocker image.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-{{r_version}}"
-      },
-      "platforms": ["linux/amd64"],
-      "cache-to": ["type=inline"]
-    },
-    "ml": {
-      "dockerfile": "dockerfiles/ml_{{r_version}}.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-{{r_version}}"
-      },
-      "platforms": ["linux/amd64"],
-      "cache-to": ["type=inline"]
-    },
-    "ml-verse": {
-      "dockerfile": "dockerfiles/ml-verse_{{r_version}}.Dockerfile",
-      "labels": {
-        "org.opencontainers.image.title": "rocker/ml-verse",
-        "org.opencontainers.image.description": "Docker image with R + GPU support for machine learning libraries, and many R packages.",
-        "org.opencontainers.image.base.name": "docker.io/nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04",
-        "org.opencontainers.image.version": "R-{{r_version}}"
-      },
-      "platforms": ["linux/amd64"],
-      "cache-to": ["type=inline"]
     }
   }
 }
diff --git a/build/templates/dockerfiles/cuda.Dockerfile.txt b/build/templates/dockerfiles/cuda.Dockerfile.txt
deleted file mode 100644
index c7adc494..00000000
--- a/build/templates/dockerfiles/cuda.Dockerfile.txt
+++ /dev/null
@@ -1,40 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="{{r_version}}"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="{{cran}}"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts /rocker_scripts
diff --git a/build/templates/dockerfiles/ml-verse.Dockerfile.txt b/build/templates/dockerfiles/ml-verse.Dockerfile.txt
deleted file mode 100644
index f505c69f..00000000
--- a/build/templates/dockerfiles/ml-verse.Dockerfile.txt
+++ /dev/null
@@ -1,71 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="{{r_version}}"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="{{cran}}"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="{{rstudio_version}}"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
-COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
-RUN /rocker_scripts/install_verse.sh
-
-COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
-RUN /rocker_scripts/install_geospatial.sh
-
-COPY scripts /rocker_scripts
diff --git a/build/templates/dockerfiles/ml.Dockerfile.txt b/build/templates/dockerfiles/ml.Dockerfile.txt
deleted file mode 100644
index 1d5a81c2..00000000
--- a/build/templates/dockerfiles/ml.Dockerfile.txt
+++ /dev/null
@@ -1,64 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="{{r_version}}"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="{{cran}}"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="{{rstudio_version}}"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/cuda_4.3.3.Dockerfile b/dockerfiles/cuda_4.3.3.Dockerfile
deleted file mode 100644
index 7c6a53a2..00000000
--- a/dockerfiles/cuda_4.3.3.Dockerfile
+++ /dev/null
@@ -1,33 +0,0 @@
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.3.3"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-04-23"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN /rocker_scripts/setup_R.sh
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/cuda_4.4.1.Dockerfile b/dockerfiles/cuda_4.4.1.Dockerfile
deleted file mode 100644
index d24ce307..00000000
--- a/dockerfiles/cuda_4.4.1.Dockerfile
+++ /dev/null
@@ -1,40 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.1"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-10-30"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/cuda_4.4.2.Dockerfile b/dockerfiles/cuda_4.4.2.Dockerfile
deleted file mode 100644
index 14f732c4..00000000
--- a/dockerfiles/cuda_4.4.2.Dockerfile
+++ /dev/null
@@ -1,40 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.2"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/noble/latest"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/cuda_devel.Dockerfile b/dockerfiles/cuda_devel.Dockerfile
deleted file mode 100644
index 18c85de2..00000000
--- a/dockerfiles/cuda_devel.Dockerfile
+++ /dev/null
@@ -1,40 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="devel"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://cloud.r-project.org"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml-verse_4.3.3.Dockerfile b/dockerfiles/ml-verse_4.3.3.Dockerfile
deleted file mode 100644
index 0e3ce1eb..00000000
--- a/dockerfiles/ml-verse_4.3.3.Dockerfile
+++ /dev/null
@@ -1,64 +0,0 @@
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.3.3"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-04-23"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN /rocker_scripts/setup_R.sh
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2023.12.1+402"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
-COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
-RUN /rocker_scripts/install_verse.sh
-
-COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
-RUN /rocker_scripts/install_geospatial.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml-verse_4.4.1.Dockerfile b/dockerfiles/ml-verse_4.4.1.Dockerfile
deleted file mode 100644
index dcfafce3..00000000
--- a/dockerfiles/ml-verse_4.4.1.Dockerfile
+++ /dev/null
@@ -1,71 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.1"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-10-30"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.09.1+394"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
-COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
-RUN /rocker_scripts/install_verse.sh
-
-COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
-RUN /rocker_scripts/install_geospatial.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml-verse_4.4.2.Dockerfile b/dockerfiles/ml-verse_4.4.2.Dockerfile
deleted file mode 100644
index 8a859825..00000000
--- a/dockerfiles/ml-verse_4.4.2.Dockerfile
+++ /dev/null
@@ -1,71 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.2"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/noble/latest"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.12.0+467"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
-COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
-RUN /rocker_scripts/install_verse.sh
-
-COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
-RUN /rocker_scripts/install_geospatial.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml-verse_devel.Dockerfile b/dockerfiles/ml-verse_devel.Dockerfile
deleted file mode 100644
index f9f6262b..00000000
--- a/dockerfiles/ml-verse_devel.Dockerfile
+++ /dev/null
@@ -1,71 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="devel"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://cloud.r-project.org"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.12.0+467"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
-COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
-RUN /rocker_scripts/install_verse.sh
-
-COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
-RUN /rocker_scripts/install_geospatial.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml_4.3.3.Dockerfile b/dockerfiles/ml_4.3.3.Dockerfile
deleted file mode 100644
index 99edb644..00000000
--- a/dockerfiles/ml_4.3.3.Dockerfile
+++ /dev/null
@@ -1,57 +0,0 @@
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.3.3"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-04-23"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN /rocker_scripts/setup_R.sh
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2023.12.1+402"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml_4.4.1.Dockerfile b/dockerfiles/ml_4.4.1.Dockerfile
deleted file mode 100644
index 8399809c..00000000
--- a/dockerfiles/ml_4.4.1.Dockerfile
+++ /dev/null
@@ -1,64 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.1"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/jammy/2024-10-30"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.09.1+394"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml_4.4.2.Dockerfile b/dockerfiles/ml_4.4.2.Dockerfile
deleted file mode 100644
index be63af58..00000000
--- a/dockerfiles/ml_4.4.2.Dockerfile
+++ /dev/null
@@ -1,64 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="4.4.2"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://p3m.dev/cran/__linux__/noble/latest"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.12.0+467"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts /rocker_scripts
diff --git a/dockerfiles/ml_devel.Dockerfile b/dockerfiles/ml_devel.Dockerfile
deleted file mode 100644
index 965a8d51..00000000
--- a/dockerfiles/ml_devel.Dockerfile
+++ /dev/null
@@ -1,64 +0,0 @@
-# syntax=docker/dockerfile:1
-
-FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04
-
-ENV R_VERSION="devel"
-ENV R_HOME="/usr/local/lib/R"
-ENV TZ="Etc/UTC"
-
-COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
-RUN /rocker_scripts/install_R_source.sh
-
-ENV CRAN="https://cloud.r-project.org"
-ENV LANG=en_US.UTF-8
-
-COPY scripts/bin/ /rocker_scripts/bin/
-COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
-RUN <<EOF
-if grep -q "1000" /etc/passwd; then
-    userdel --remove "$(id -un 1000)";
-fi
-/rocker_scripts/setup_R.sh
-EOF
-
-CMD ["R"]
-
-ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"
-
-COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
-RUN /rocker_scripts/config_R_cuda.sh
-
-ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
-ENV RETICULATE_AUTOCONFIGURE="0"
-ENV PURGE_BUILDDEPS="false"
-ENV VIRTUAL_ENV="/opt/venv"
-ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"
-
-COPY scripts/install_python.sh /rocker_scripts/install_python.sh
-RUN /rocker_scripts/install_python.sh
-
-COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
-RUN /rocker_scripts/install_tidyverse.sh
-
-ENV S6_VERSION="v2.1.0.2"
-ENV RSTUDIO_VERSION="2024.12.0+467"
-ENV DEFAULT_USER="rstudio"
-
-COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
-COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
-COPY scripts/default_user.sh /rocker_scripts/default_user.sh
-COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
-COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
-COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
-RUN /rocker_scripts/install_rstudio.sh
-
-EXPOSE 8787
-CMD ["/init"]
-
-COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
-RUN /rocker_scripts/install_pandoc.sh
-
-COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
-RUN /rocker_scripts/install_quarto.sh
-
-COPY scripts /rocker_scripts
diff --git a/tests/rocker_scripts/matrix.json b/tests/rocker_scripts/matrix.json
index 033fdf33..ed26af62 100644
--- a/tests/rocker_scripts/matrix.json
+++ b/tests/rocker_scripts/matrix.json
@@ -16,8 +16,7 @@
     "install_geospatial.sh",
     "install_python.sh",
     "install_jupyter.sh",
-    "install_julia.sh",
-    "install_cuda-10.1.sh"
+    "install_julia.sh"
   ],
   "script_arg": [
     "none"
@@ -47,12 +46,6 @@
       "script_name": "install_quarto.sh",
       "script_arg": "prerelease"
     },
-    {
-      "base_image": "rocker/cuda",
-      "tag": "latest",
-      "script_name": "install_verse.sh",
-      "script_arg": "none"
-    },
     {
       "base_image": "debian",
       "tag": "stable-slim",