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Add very common repeats in the human genome. #153

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rhpvorderman opened this issue May 17, 2024 · 1 comment
Closed
3 tasks

Add very common repeats in the human genome. #153

rhpvorderman opened this issue May 17, 2024 · 1 comment

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@rhpvorderman
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rhpvorderman commented May 17, 2024

  • PolyA,
  • PolyAT
  • PolyAC/CA

I also found this sequence to be present a lot:

CCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC
revcomp:
GTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG

It maps to human ImmunoGlobolin heavy chain, but is also a very common repeat structure in the human genome. I need to do some more searching.

@rhpvorderman
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This has been done, but this is not the way forward. It is better to limit the amount of human genome from being sampled by not sampling the entire read but just the extremities. Otherwise there is no end to the amount of repeats that should be added.

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