Commit 9ee88b9
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- 13check_rna
- 16s-itgdb
- 2-kupl
- 2kplus2
- 2pg_cartesian
- 3dfi
- 3dscript.server
- 3mint
- 4d-fed-gnn
- 4dr-gan
- 4droot
- 4mcpred-el
- a-itr
- a1slottogel_bandar_togel_online_singapore_4d_terpercaya
- a2tea
- aasra
- abawaca
- abdesign
- abi2link
- abm-tki
- abolishing_activity
- abpoa
- absp
- ac2
- aca
- accuenhancer
- acdc_estimation
- aceapi
- acep
- aces-conservation
- acidbio
- aclust2.0
- acp-mhcnn
- acsni
- adabmdca
- adeip
- adequacymodel
- adipoq
- admixem
- admixr
- adni-3
- aegean
- afplot
- afst
- afterqc
- agln
- agnostos-db
- aidd
- aioner
- airr_tools
- aiscea
- al3c
- ales
- ale
- alibaseq
- align3d
- allegro
- almostsignificant
- alphadrop
- alphaimpute
- alphampsim
- als
- altair
- altamisa
- aluscancnv2
- alvin
- alvis
- ambergpumdsimulation
- amm
- ampdeep
- amplisolve
- anamir
- anarci
- anchor
- anduin
- aneuvis
- animal_tfdb
- anncolvar
- anndata
- antarna
- antibody_registry
- aodp
- aparecium
- apscale
- aptardi
- aqmm
- aqua-hichip
- arachnoserver
- araqtl
- ares-gt
- arg
- aria_access
- arks
- arnaque
- aromtool
- arpir
- arraylasso
- arrowsam
- artdeco
- artic-porechop
- artic
- arvados-python-client
- as-quant
- asa-ps
- asaim
- asdmir
- asgard
- ashlar
- aspralign
- assembly-scan
- assemblyutility
- atacannor
- atbppred
- atlasbrex
- atropos
- atsnp
- autoccs
- autode
- autodock_vina
- autofc
- automorph
- autoscanj
- autoscore
- availabilityelmeri
- availabilityribotricer
- avatar
- avp
- awcluster
- axiome
- backports.csv
- bacmapping
- bacmman
- bacnet
- bacphlip
- bacting
- bagel2-bayesian
- bagel3
- bagel4
- bagel
- bags-barcode
- balrog
- bamhash
- bamread
- bamstats
- bamtools
- bamutil
- bandage
- barware
- baseless
- basespacer
- batchmap
- bats_neuroimaging
- bayesian_metabolic_flux_analysis
- bayestyper
- bc_intrinsic_subtyping
- bcalm
- bcbio-nextgen
- bcbio-rnaseq
- bcl2fastq-nextseq
- bctools
- bddb
- bdetools
- beable-gps
- beagle-lib
- beastiary
- beast
- beatsonlab-microbialgenomics
- becon
- bedtools_bamtobed
- bedtools
- beerapp
- bellmans-gapc
- bem
- benchmarkncvtools
- bermuda
- bertrand
- best_bam-error-stats-tool
- betascan2
- bexis2
- bfptool
- bgc
- bgmix
- bhi-cect
- biasaway
- bidsonym
- big-fam
- bigan
- bigbrainwarp
- bigknock
- bigld
- bigsi
- bindash
- bingleseq
- binlorry
- binoculars
- binosnp
- bio-cigar
- bio2bel
- bio_contrast_subgraph
- bioalcidae
- biobambam
- biobasehttptools
- biobase
- biobb_adapters
- biobb_ml
- biobb_structure_utils
- bioblend
- biobtree
- biocantor
- biocarta
- bioclojure
- bioconductor-cn.mops
- bioconductor-dearseq
- bioconductor-fis
- bioconductor-flowsorted.blood.450k
- bioconductor-gagedata
- bioconductor-genelendatabase
- bioconductor-pmp
- bioconductor-raex10stprobeset.db
- bioconductor-rnbeads.hg19
- bioconductor-rtcga.mrna
- bioconductor-scope
- bioconductor-txdb.celegans.ucsc.ce11.refgene
- bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
- biocontext
- bioconvert
- bioepic
- bioerp
- bioframe
- biogeom
- biogridpy
- biojs-alg-seqregion
- biojs-meta-parser
- biojs-model
- biojs-rest-ensembl
- biojs-vis-chromosome
- biojs-vis-easy_features
- biojs-vis-keggviewer
- biojs-vis-pmccitation
- biomethyl
- biomoby
- bionanoanalyst
- bioner_cross-sharing
- bioner
- bionitio
- bionode-bwa
- biopartsdb
- bioperl
- biopet-fastqsplitter
- biopet-sampleconfig
- biopet-seqstat
- biopet-validatefastq
- biopet-vcffilter
- biopet
- biopig
- biorepository_portal_toolkit
- biorssay
- bioscitools
- biotip
- biovae
- biovalidator
- birds
- biscuit
- bismark
- bites
- bitstring
- blast-filter-tool
- bleach
- blomaps
- blupadc
- bnbr
- bohra
- boiler
- boolspace
- botocore
- bphunter
- bpp-phyl
- bracoli
- brain_interactome_explorer
- brainspace
- branenet
- breakalign
- breeze
- bs-virus-finder
- bsde
- bsfinder
- bttcmp
- bttoxin_scanner
- bus_set
- bwa-mem2
- bwa-meme
- bwapy
- bwa
- bwread
- bx2s-net
- c-hmm
- cacp-deepgram
- cafe_calculation_of_free_energy
- cafew
- caisc
- calcus
- caldera
- calib
- califorest
- callc
- camap
- cameo
- cami-amber
- cam
- canary
- cancercelltracker
- cancerhervdb
- candi_integrator
- candycodes
- caper
- capsim
- captor
- caretta
- carna
- carthagene
- casbert
- casee
- casnp
- casowary
- casper_merging
- casp
- castles
- castnet
- cat_bins
- cat_chemical
- catana
- cate
- catrapid_signature
- catt
- cat
- causal-extractor
- causaltrail
- causnet
- caves
- ccip
- ccivr
- ccla
- ccmetagen
- ccrxp
- ccsol
- cdap
- cddb
- cdsnake
- cel-id
- cell-id
- cell-motility
- cellchat
- cellcoal
- cellharmony
- cellinker
- cellmaptracer
- cello
- cellsium
- cellsnake
- cellsnp-lite
- celltag
- celltrackvis
- cellxgene
- cenhancer
- census_travel
- centrifuge
- centroflye
- centromerearchitect
- cerr
- cfnet
- cfsnv
- cfsp
- cga-bni
- cgat-daisy
- cgbind
- cgmtsa
- cgrnasp
- chado-tools
- chaincleaner
- chanjo
- chapao
- chap
- characteristic_direction_method
- check-sort-order
- chemchaste
- chemfp
- chemistry42
- chempix
- chemsearch
- chemtables
- chemwalker
- chewbbaca
- chia-pet
- chilife
- chinn
- chinook
- chip-array
- chiron
- chit
- chloroplot
- chrokit
- chromaclade
- chromagnon
- chromatiblock
- chromhmm
- chromvar
- chronoroot
- chronumental
- chunked-scatter
- cinema_snap
- cipher
- cipro_2.5
- circcnn
- circfusion
- circimpact
- circminer
- circompara2
- circrnawrap
- circr
- cirgo
- cisregtest
- citl
- citrus
- claire_scrna
- claire
- clame
- clann
- classifierc
- clearcnv
- click
- clin_skat
- clinker
- clipcrop
- clipkit
- clipplotr
- clip
- cliquely
- cliquems
- cliquesnv
- clmb
- clonaltree_b_cell
- cloudasm
- clover_cluster
- clue-kinetics
- clusem
- clustermap.js
- clusterseg
- clust
- cmdsr
- cmfmtl
- cmfsm
- cmvdrg
- cna_origin
- cnasim
- cncrnadb
- cnest
- cnn-peppred
- cnv_facets
- cnvind
- cnvkit
- cnvnator
- co-amppred
- co-correcting
- coac
- coadti
- cobel-rl
- cobia
- cobrapy
- coconet
- codabench
- codaloss
- coda
- codifold
- codonadjust
- cogent
- cognac-align
- colide
- collabonet
- colocquial
- comer
- commap
- commonnnclustering
- compacta
- comparative-annotation-toolkit
- compleasm
- complexplus
- complex
- compositedriver
- composition_profiler
- compsra
- comut
- con-aae
- conanvarvar
- conditional_colocalization
- condor
- confocalgn
- conformer-rl
- congas
- connectedreads
- consensuspathdb
- consensusprime
- conservation_archive
- containerprofiler
- contamde-lm
- conterminator
- contigtax
- continuity
- contort
- contourv1
- contourv2
- contreedp
- coolbox
- coprarna
- coremine_medical
- coretracker
- corins
- coronacentral
- corset
- coryneregnet
- cosims
- cosinormixedeffects
- costa
- counterr
- coveragetool
- covid-19-knowledge-graph
- covid-19_dashboard
- covidanno
- covidex
- covnorm
- coxmkf
- coxpresdb
- cpc2
- cpdb
- cpg_transformer
- cpi-igae
- cpinsim
- cppa
- cqf-denoise
- crabnet
- crcdb
- crc
- crimp
- crimson
- cris_single-sample
- crisp_metabolomics
- crispr_grant
- crisprcasidentifier
- crisprcasstack
- crispresso
- crisprimmunity
- crisprloci
- crisprmap
- cronos
- crossalive
- crosslinkwgcna
- crpgcn
- crumble
- cryfa
- crystit
- csm
- ctc_5
- ctk_clip
- ctmmweb
- cto
- cuda-meme
- cui2vec
- culebront
- cumulus
- curtain
- custommune
- cwltest
- cyanorak
- cybersco
- cyordereddict
- cytoconverter
- cytof_workflow
- cytonorm
- cytoscape_automation
- cytoset
- cyushuffle
- cyvcf2
- d-bfa
- d-cellerate
- dab-quant
- dadapy
- daligner
- damidseq_pipeline
- dammit
- dascrubber
- datadiscovery
- datafunk
- dataharmonizer
- dazz_db
- dbfe
- dbgraph
- dbscorer
- dca
- dcgn
- dcgor
- dcmd
- dcmqi
- dcpha
- dcplib
- dcsau_net
- ddpcrclust
- ddseeker
- ddt
- ddvfa
- deap
- dear_diasupxmbd_sup
- decaf
- decrippter
- deep-drm
- deep-framework
- deep-loop
- deepaction
- deepbinner
- deepbrainipp
- deepd2v
- deepdist
- deepdrpbind
- deepdtaf
- deepgraphgo
- deepgrn
- deepligand
- deeplpi
- deepmanreg
- deepmased
- deepmf_autogenerated
- deepmf
- deepmicrobes
- deepmotifsyn
- deepmp
- deepmr
- deepphewas
- deepr2cov
- deepreal
- deeprei
- deepselex
- deepside
- deepsinse
- deepst
- deepsvp
- deepsweep
- deepsyn
- deeptoolsintervals
- deepvariant
- deerect-tss
- degnext
- degsm
- deleat
- deltanets
- dendronet
- dendropy
- denoptim
- depht
- depthsizer
- depth
- desamba
- deuterater
- dextractor
- dia-nn
- dialign-tx
- diamond_add_taxonomy
- diamond
- dice-xmbd
- dicer
- did-anet
- diffchipl
- differentiable_btr
- diffslc
- dima_imputation
- dimelo-seq
- dimple
- dinar
- dindel
- dino
- dipend
- directlfq
- disambiguate
- discasm
- disco_qr
- disco
- discromark
- discrover
- dissco
- disseqt
- distilprotbert
- dither
- divcom
- divis
- dlae
- dlcpar
- dlf-sul
- dloopcaller
- dnaprodb
- dnashape
- dnmivd
- dnnrmst
- dockecr
- dockey
- domainmapper
- dorado
- dp4-ai
- dp5
- dpctf
- dpprom
- dpsleep
- draw
- drcon
- drda
- dream
- driparf
- dropletqc
- dropletutils-scripts
- dropseq_tools
- drop
- drpbind
- drugpy
- drugz
- druidom
- dryclean
- dscellnet
- dscmf
- dscn
- dsfworld
- dsid
- dsressol
- dtitr
- dtu-dads-aqua
- dualgcn
- duet_sequencing
- duet
- dug
- dupgen_finder
- dwgsim
- dx-cwl
- dxm
- dyedb
- dynamicviz
- dynbgp
- e-gp
- e-mutpath
- e-scape
- e-tsn
- e.page
- e2edna
- eagerer
- eagle_gxe
- eags
- earn
- eastr
- easy2hard
- easymf
- eat-uptf
- eatomics
- ebwt2indel
- ec-pgmgr
- eccsplorer
- echidna
- ecmtool
- eco-collectf
- ecuador
- edittag
- egae
- eggnog-mapper
- egreenhouse
- ehrtemporalvariability
- eip
- eland
- elefhant
- elliptrack
- elmeri
- embedseg
- embl2checklists
- emcbow-gpcr
- empprior
- ena-upload-cli
- enano
- encore
- endicheck
- endotime
- enhancer-if
- ens-vs
- ensemblefam
- ensembler
- ensemblesplice
- ensmod
- epb
- epic2
- epiclomal
- epic
- epigen
- epinano
- epiprofilelite
- epitope-evaluator
- epitopedia
- epiviz-feed
- epiweeks
- equisim
- ericscript
- es3
- est2assembly
- eta
- etcal
- eukrep
- evatool
- evofold2
- ewas_catalog
- examine
- exfinder
- exhaufs
- exodus
- exonskipdb
- explorate
- explorepipolin
- export_one_data
- expressbetadiversity
- extract_protein_names
- extrarg
- ezclermont
- eztrack
- facets
- facs-amp
- fact-seq
- fame_aberrations
- fam
- fanet
- fast.adonis
- fast4dreg
- fast5-research
- fast5seek
- fasta3
- fastafrombed
- fastindep
- fastq-count
- fastqcls
- fastremap
- fastskat
- fastspar
- fastx_toolkit
- fcngru
- featureselect
- febrna
- feedr
- feems
- feht
- fermi-lite
- ffltool
- ffsd
- ff
- fhir-pit
- fibro-cosanet
- fidbac
- figbird
- filtlong
- findpc
- findplantnlrs
- findzx
- fipresci
- firedb_ws
- firestar
- fireworks
- fitdevo
- flam-seq
- flare_inference
- flask-admin
- flask-bootstrap
- flask-markdown
- flexr
- flextyper
- flex
- flipper
- flirt
- flnc
- flowgatenist
- flowgrid
- flowkit
- fluconvert-iniflu
- fluevidencesynthesis
- fluorocelltrack
- flybrainlab
- flye
- fmlrc
- fnbtools
- fobitoolsgui
- focal3d
- focus
- fod-net
- foldhandedness
- foldnucleus
- foodmicrobionet
- fopa
- foreseqs
- forge_prioritizing_variants
- forgi
- forked-path
- format_metaphlan2_output
- fossahul
- fossilj
- foundry
- foxmask
- fp2vec
- fp6bd
- fqc
- fqsqueezer
- fqtools
- fr-unet
- fraggenescanrs
- freec
- fretboard
- frites
- frtpred
- ftk
- funage-pro
- funcisnp
- funfor
- fungiexpresz
- funhop
- funpart
- fusion-report
- g_rank
- gacnnmda
- galaxy
- galru
- gamer
- gamma
- gapseq
- gargammel-slim
- gargammel
- gass
- gatgnn
- gauser
- gavisunk
- gazer
- gb-easy
- gb_score
- gba1
- gbat
- gbdt-lr
- gbmunge
- gboosting
- gbrs
- gc-sms
- gcanno
- gcfront
- gclib
- gcncc
- gcncda
- gcnet
- gcnfold
- gcnmda
- gcprofilemaker
- gcsa2
- gcsnap
- gcwgan
- gdaphen
- gdc_autogenerated
- gdc
- gddfold
- gdportal
- gear-genomics
- gear
- gecko-csb
- gecko-mgv
- gecko_conservation
- gecko
- geco3
- ged_map
- gedi_r
- gedi
- geemihc
- gefast
- gemdecan
- gemmaker
- gemma
- genbank2gff3
- gender_differences_bias_open_source
- genebasis
- genecloudomics
- genedmrs
- genefatt
- genefisher2
- genefisher
- genenetfusion
- geneplotter
- genepredtobed
- genepredtogtf
- genie-codec
- gennet
- genome2or
- genomegraphs
- genomictools
- genomicus-plants
- genovault
- genovi
- genra-py
- genui
- genview
- geobind
- geoboost
- geocancerprognosticdatasetsretriever
- geombd3
- geoppi
- gepsi
- gerdh
- getorganelle
- gfastats
- gflasso
- gfsat
- ggtranscript
- glycoenzonto
- gm_gcn
- gmak
- gmhcc
- gmqn
- gmx_mmpbsa
- gnn-surrogate
- gnn_som
- gnnhap
- goat
- gocompare
- gonuts
- gopeaks
- goslin
- gpcr-ssfe
- gpsy
- gr_predictor
- grace-ako
- grape_pipeline
- graph-dom
- graph2go
- graph2mda
- graphlan
- graphomics
- graphreg
- grasviq
- gravis
- greenc
- groopm
- gs_smd
- gsca_cancer
- gse104854
- gse59867
- gseapy
- gsearch
- gsel
- gtf_to_genes
- gtftogenepred
- gtftools
- gtseq-pipeline
- gubbins
- guidefinder
- guidingnet
- gust
- gvcf2coverage
- gvcftools
- gwas3d
- gwas
- gwidecodeml
- gxd
- gxformat2
- h-protection
- h-tsne
- hamdb
- haplo-st
- haplodx
- haploview
- haplowser
- hapog
- harsh
- haru
- hashseq
- hd-explosion
- hdflex
- hdmc
- hdxer
- heartcv
- heatmaps
- hecatomb
- helixer
- herbkg
- hetmatpy
- hgcs
- hgtools
- hgtphylodetect
- hgtree
- hgvbase
- hi-c_aggregate
- hi-chip-ml
- hicbin
- hichipper
- hicsr
- hictk
- hiczin
- hierarchicell
- hifens
- hifiasm
- high_ppi
- hignn
- hiline
- histome
- hitc
- hivoligodb_-_the_hiv_oligonucleotide_database
- hla_clus
- hlmethy
- hlppred-fuse
- hnoxpred
- homopolish
- homs_tc
- hostile
- hotspot3d
- hpofiller
- hreg-cncc
- hruv
- hsnet
- hsst
- htftarget
- htqpcr
- htrack
- htrgene
- htslib
- hummingbird
- hvf_extraction_script
- hwep
- hyb4mc
- hybkit
- hybpiper-rbgv
- hydra_bnpy
- hypacadd
- hyperhmm
- hypro
- i2b2-etl
- i2d_r
- iamy-scm
- iantisplodge
- ibitter-fuse
- ibitter-scm
- iblast
- ibmd
- ica
- icbatlas
- ichespa
- icm_web
- icomic
- idacp
- idbp-dep
- idio
- idjexpress
- idpgk
- idppiv-scm
- idvip
- ifcnv
- ifit
- iflnc
- igdiscover
- igidiva
- igt
- ihmnbs
- ihrw
- iht
- iifdti
- ijoq
- iksak
- ilee
- illumina-utils
- imagem
- imc-denoise
- imedigan
- img2net
- imlp
- immucellai-mouse
- immucellai
- immunedeconv
- imos
- impmd
- improve-dd
- inforna
- inoiset
- input
- insct
- insilicospectro
- intapt
- intarna
- interaccircos
- interartic
- interferome
- interleafq
- interva-5
- invbfm
- iodata
- iofs-sa
- ion-to-image
- ioncram
- ionflow
- iori-enst
- ipa_hifi
- ipanemap
- ipathwayguide
- ipcarf
- ipcoal
- ipick
- ippi-deepl
- ipro-wael
- ips-gruatt
- iptdfold
- ipyrad
- ir-tex
- irida-linker
- irissv
- irscope
- isa4j
- isfrag
- isochore
- isocompy
- isoformswitchanalyzer
- isonclust2
- isoncorrect
- isonet
- isunstruct
- itcep
- itolparser
- ittca-hybrid
- iucn_sim
- iumami-scm
- ivs-caffe
- jabberdock
- jalview
- jannovar-cli
- japonicusdb
- jax-reaxff
- jcvi
- jdinac
- jloh
- jmbe.v13i2.414
- jmbe.v14i1.494
- jmztab-m
- jorca
- jpa
- jpsa
- jumper
- june
- jupytope
- ka-search
- kage
- karawun
- karect
- kegg_extractor
- kgcn_nfm
- khmer
- kimma
- kipoi
- kipper
- kludo
- kmc
- kmdata
- kmerinshort
- kmerstream
- kompute
- kpp
- ksrates
- kyototycoon
- l3n
- label3dmaize
- labrat
- lagrange-ng
- laminin_database
- ldblockshow
- ldmat
- learnmsa
- legsta
- lfq-analyst
- lfqc
- libra_k-mer
- liger
- likeltd
- lime
- limo
- linadmix
- linearpartition
- linkedimm
- links
- lion
- liquorice
- list-s2
- llamanade
- llpc
- lme4gs
- lncrnakb
- loftk
- lola
- longgf
- longstitch
- loni-qc
- loretta
- lorikeet-genome
- lowki
- lrbinner
- lrgapcloser
- lriscan
- lsmmd-ma
- lstd
- ltr_retriever
- lukasa
- luna
- lusstr
- luxhmm
- luxr
- lyner
- lyrus
- m2remap
- m6a-express
- maaper
- mabellini
- macaron
- maca
- machine-learned_ses
- macrel
- macs2
- macs
- magallanes
- magicalrsq
- magine
- mainzelhandler
- maizesnpdb
- making_soup
- maldi_quant
- maldimid
- mamnet
- mapache
- mapbayr
- mapi
- maplet
- maps-phenotype
- mapsplice
- maracas
- margaret
- marginalign
- markerhub
- marna
- mars_sv_calling
- mars
- mason
- mat2
- match
- matisse
- matsas
- maxatac
- ma
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- mca-unet
- mcl-caw
- mcpca_popgen
- md_davis
- mdags
- mdbg
- mdipa
- mdpet
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- mdtnet
- me-scan
- mearec
- mechanalyze
- medea
- medicdeeplabv3
- medusa-data-fusion
- medusapy
- megad
- mego_pay
- meirlop
- mem3dg
- membrain_pipeline
- meme_suite
- memrgc
- memtrax
- mendeliht.jl
- mendelmd
- menotr
- mepp
- meqa
- mergeomics
- merida
- messi
- meta-4mcpred
- meta-disc
- meta-gecko
- meta-ipvp
- meta-storms
- metaanalyst
- metabcombiner
- metabolite-investigator
- metabolite_autoplotter
- metabolitedetector
- metaboprep
- metacortex
- metafunprimer
- metagoflow
- metamaps
- metaomics
- metaphage
- metapopr
- metaprokka
- metashot_prok-quality
- metatrass
- metexplore
- metfrag
- metheor
- methodsj2
- methylc-analyzer
- methyldackel
- methylpiper
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- mfl-net
- mgert
- mhadti
- miami
- micellanngelo
- micnet_toolbox
- microbench
- microbeseg
- microcounter
- micrompn
- micromummie
- microphaser
- midas2
- midashla
- midasr
- millipede
- mimir
- mini-covidnet
- minimac3
- minimap2
- miniontm
- minos
- mintia
- mintie
- minto
- mir-prefer
- mirconnx
- mirgtf-net
- mirkit
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- mirmodulenet
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- mirnasnp-v3
- mirsm
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- mitobim
- mitoscape
- mixonat
- mixs-sa
- ml-dbscan
- ml4bio
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- mlplasmids
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- mminp
- mml
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- mmvec
- mndr
- mobidic-mpa
- model-m
- modelmatcher
- modphred
- modtect
- mofi
- mol2context-vec
- moldata
- molpopgen-analysis
- molscribe
- molsearch
- momba
- moments
- monago
- montecarbo
- moods
- moomin
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- morphdata
- mosaicexplorerj
- moscato
- mosdef-cassandra
- mosdef-gomc
- moss
- motif_prob
- motif_scraper
- motifgenie
- mowserv
- mp-net
- mpa_pathway_tool
- mparce
- mpass
- mpradecoder
- mptevol
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- mr-mdr
- mr-mega
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- mstractor
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- multik
- multinichenet
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- multiwgcna
- mumot
- mutarna
- mutationtcn
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- mwga-utils
- mwtab
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- nae
- nanodisco
- nanopolishcomp
- nanosplit
- nanospring
- nanostr
- nanotrf
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- nasca
- natural_products_atlas
- ncbi_bookshelf
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- nebcutter
- negative_training_sampler
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- nerna
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- netanova
- netstrat
- network2canvas
- neuralpolish
- neuromechfly
- nextcast
- nextclade
- nf-core-taxprofiler
- nf-core
- ngauge
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- ngs-disambiguate
- ngscomposer
- niapu
- nibna
- nipah
- nlstradamus
- nmrml2isa
- nmseer_v2.0
- node2vecplus
- norec4dna
- normseq
- norsnet
- novasplice
- npd
- npvis
- nrn-ez
- nspa
- nt-seq
- nteditsealer
- nthash2
- ntlink
- ntsm
- nucleofinder
- nucleomap
- nucls
- nzffdr
- o-net
- oakvar
- obitools
- ocd
- ocem
- ocimido
- odgi
- off-target_pipeline
- ologram
- omen
- omics-data-paper-shinyapp-golem
- omicsev
- omicsgat
- omim
- omnipose
- oncodrivefm
- onetool
- onfhir.io
- onn4arg
- ontology_development_kit
- open-cravat
- openastexviewer
- openbabel
- openduck
- opengdc
- openmdlr
- opentargets-urlzsource
- opfi
- oppontology
- opscc
- optimus
- orforise
- orsum
- orthofinder
- osanalyzer
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- outsingle
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- p-binder
- p-smoother
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- palm
- palo
- pals-pathway
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- pangolin
- panphlan
- papet
- paqr
- parallel-fastq-dump
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- pargt
- parsnp
- partr2
- partsgenie
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- patch-seq
- pathext
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- pathme-clustering
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- pathwaymatcher
- pato_3h
- pato
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- pcfun
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- pclogit
- pcos
- pd-cr
- pdb-tools
- pdgpcs
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- pearmodb
- pecat
- pedibd
- penguin
- pen
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- pepr
- peptide-shaker
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- perl-datetime-locale
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- perl-extutils-installpaths
- perl-fastx-abi
- perl-file-slurper
- perl-file-util
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- perl-image-exiftool
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- perl-mime-types
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- perl-params-validationcompiler
- perl-pod-elemental
- perl-test-classapi
- perl-test-most
- perl-variable-magic
- personal_genome_browser
- pesa
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- petfold_and_petcofold
- petri-net-exhaustive-simulator
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- pgfinder
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- pgnneo
- phagetailfinder
- phantompeakqualtools
- pharmmapper-drug
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- phdhtm
- phenotagger
- phi-c
- phirbo
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- physicool
- physiolibrary
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- promotech
- pronto
- pros-gnn
- prose
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- proteaseguru
- protein-domain-segmentor
- proteinevolverabc
- proteomicsqc
- proteomill
- proteosushi
- proteoviz
- prothon
- protmapper
- protrank
- proximid
- prs_knowledge_base
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- py_diaid
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- pyautofep
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- pyclone
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- pyir
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- pyomeroupload
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- pyradise
- pyranges
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- pyrsd-coev
- pyslim
- pysustain
- pyteomics
- pythomics
- python-bioformats
- python-hppy
- python-newick
- python-rnacentral
- pyvisualfields
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- quickfigures
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- r2r
- rabit
- ramr
- rana-seq
- rapidgsea
- rappas
- raptorx-complexcontact
- raptorx
- rascl
- razers3
- rcat
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- rdc-panda
- rdmp
- rdp-readseq
- rdscan
- read_haps
- readdepth
- readfish
- readucks
- rebaler
- recentrifuge
- recetox-aplcms
- reciter
- recognicer
- refbool
- reffinder
- regeo
- regional
- regscan
- relativenas
- remap-pathway
- remode
- repark
- repeatmodeler
- replicateoutliers
- rera
- rerconverge
- response_logic
- retropath_rl
- revise
- rf-net2
- rfmix
- rfsc
- rgai
- rgreat
- rhizovision-explorer
- rhometa
- ribopeaks
- ribotish
- ribotricer
- riboview
- ribovision
- ribowaltz
- rilseq
- rimmport
- ring_pymol
- ripplenet
- riptide
- riscoper
- rlz-graph
- rmapper
- rmblast
- rna-cd
- rnaactdrug
- rnabindrplus
- rnabrowse
- rnadisease
- rnagraphdist
- rnainter
- rnalocate
- rnanetmotif
- rnanue
- rnapdbee
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- robocop
- roiformsi
- rop
- roseq
- rosettasurf
- rowdiff
- rpf-count-cds
- rpinbase
- rpkmforgenes
- rpowerlib
- rprh
- rrest
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- rswebtool
- rtp
- run-dbcan
- runbng
- runcer-necromancer
- rupee
- rust-ncbitaxonomy
- ruth
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- rxnat
- ryuto
- s-lwsr
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- scan
- scar
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- scint
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- scope-cheminformatics
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- scxa-plots
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- sdm6a
- sdn2go
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- seamote
- secapr
- seekcrit
- segdgan
- selenzyme
- sembionlqa
- semplme
- sensv
- sepca
- sepia-phase
- seq-symrf
- seq-to-first-iso
- seqenhdl
- seqfu
- seqhax
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- sequence_in_sequence_finder
- seqwho
- seqwish
- serac
- sergio
- serosolver
- serpentine
- serrana
- ser
- setapp
- sete
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- sgrp_blast_server
- sgtr
- shadowcaster
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- shapeshifter
- sharp
- shasta
- shepherd
- sherlock_nmr
- shiny-deg
- shinycell
- shinydepmap
- shournal
- shovill-se
- shrinksam
- si-fi
- sibeliaz
- sig2biopax
- sigminer
- silva
- simba
- simkamin
- simka
- simpledsfviewer
- simpli
- simupop
- sina
- sinfonia
- singlecellnet
- single
- sinoduplex
- sirfinder
- sirius-csifingerid
- sivae
- sketchy
- skinphaser
- sksv
- slang
- sleep
- slicembler
- slicercbm
- slmgae
- slnpm
- slow5curl
- smalf
- smart_cancer_predictive_system
- smiter
- smma-hnrl
- smog-mapping
- snakemags
- snare-cnn
- snekmer
- snoglobe
- sno
- snpadomain
- snpmap
- snpqt
- snprecode
- snpstarrseq
- snptracker
- sns-align
- sodb
- solid_qual_stats
- soltrannet
- soluphred
- somalier
- somaticsimu
- somatosim
- songexplorer
- sonneityping
- sos_notebook
- space
- sparse-neighbors-search
- spascer
- spd-cnn
- speach_af
- spear
- spectacle
- specter
- speedseq
- speedygenesxl
- spiderlearner
- spikchip
- spikeinterface
- spikepro
- splace
- split-pin
- splitavg
- splitdist
- spm-pathway
- spm_autogenerated
- spot-struct-dna
- spot-struct-rna
- sprint
- srgs
- srnarftarget
- srnatoolbox
- ssatan-x
- ssber
- sskm-succ
- ssre
- stackhcv
- stackil6
- staden_io_lib
- stallion
- stam
- standena
- stapaminer
- star-retinex
- starrpeaker
- start-asap
- star
- statcheck
- stegarmory
- stellaris
- stemsim
- stig
- stoatydive
- storm-riboregulator
- storyboardr
- strack
- strainxpress
- strawberry
- stream
- strelka
- strike-goldd
- stringtie
- strongestpath
- structure-ppi_web
- subatomic
- subcellularvis
- subphaser
- subseqhash
- suchtree
- suffpcr
- sulfatlas
- sumer
- sumgnn
- summaryauc
- super-delta
- supercryoempicker
- superdsm
- superfamily
- supersplat
- suppa
- suretypesc
- sure
- surface_id
- survbenchmark
- survivor
- sv-callers
- svhound
- svict
- svim-asm
- svist4get
- svlr
- svreg
- svtk
- svviz
- swalign
- swan
- swembl
- swga
- swifi
- swift-illumina
- swift
- sword
- syllable-pbwt
- symbiquant
- symmap
- synapseclient
- syntalinker
- synttax
- t-analyst
- t-rmsd
- t2-dag
- t7
- tabview
- tadbd
- tamock
- tampa
- tango
- tap-php
- tappred
- taranis
- targetmm
- targetnet
- tasselnetv2plus
- tasselnetv2
- taxontable
- taxopy
- taxsbp
- tb_variant_filter
- tbbpred
- tbvcfreport
- tcpb
- tcrconv
- tcs-msa
- tdbrain
- tdimpute
- tdnascan
- tdrmapper
- te-hi-gcn
- tedsim
- telfinder
- tempel
- tenet
- tespex
- tesseract
- tetyper
- text2brain
- tf-pca
- tfbminer
- tgcna
- tgs-gapcloser
- tgsgapcloser
- thbp
- the_ark
- thermometer
- thermonet
- thermorawfileparser
- theta
- things-data
- throne
- thunder
- thurstonianirt
- tibanna
- tiddit
- tide
- til_classification
- tiledb-vcf
- timecycle
- timeor
- timeseriesnem
- timesias
- timesweeper
- tindl
- tinysink
- tiptoft
- tissuumaps
- tist
- tivan-indel
- tmap
- tmat
- tmbur
- tmb
- tmcrys
- tn-seq
- tn93
- tobias
- toeholder
- toff
- tonkaz
- top-down_crawl
- topostats
- torchdiva
- torrentsuite
- torsionnet
- torte
- toulligqc
- toxcms
- toxcodan-genome
- toxpigis_toolkit
- toxstar
- tppred-atmv
- tracer-3d
- tracespipe
- trackhub
- tractoinferno
- tractor
- tracy
- traitar
- transat
- transphylo
- transpire
- transporttools
- trap-seq
- trasig
- treedomviewer
- treelikeness
- treemix
- treetime
- trftar
- trimadap
- trimitomics
- trinotate
- triocnv2
- tripal
- tronco
- trtools
- trust4
- trvae
- tsebra
- tseta
- tsnapred
- tsportnet
- tspred
- tsptfbs
- tsser
- tssnote-cyaprombert
- tumorhpd
- turf-e
- tvar
- twadn
- twobitinfo
- tyto
- u2fusion
- ubds
- uc-nfnet
- uc2
- udsmprot
- uemtomaton
- uep
- ukbb-srmed
- ukbpheno
- ultraheatmap
- umap-dbp
- uni_dock
- uni_gbsa
- unifan
- uniport
- unitig-counter
- universc
- unmerge
- unphased
- uphyloplot2
- utldr
- utrannotator
- utr
- uvaia
- vadt
- valencia
- validators
- vamos
- varfish-annotator-cli
- varhc
- variantbreak
- variationget
- varifier
- varscat
- vcf2variants
- vcftools
- velosim
- veloviz
- versavis
- vgichan
- vicmpred
- vina-gpu_2.0
- viralverify
- virbase_v3.0
- virsirnadb
- visoqlr
- visor
- vispr-online
- visprodom
- visual_dynamics
- vpmbench
- vqamix
- vrpharmer
- vsclust
- vsrnafinder
- vstseed
- vt3d
- washu_epigenome_browser
- wbuild
- webprc
- wenda_gpu
- wfa
- wgnn-dta
- whocares
- wiggler
- wikinetworks
- wisard
- wisestork
- wormqtl2
- xicra
- xlnc1dcnn
- xman-v2
- xmlget
- xopen
- xpressplot
- xsi
- xsurv
- yabi
- yak
- yanocomp
- yapc
- yeast_kid
- yoripred
- ytlr
- yuzu
- zebra
- zelda
- zfishbook
- zodiac_autogenerated
- zooma
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