Commit 2f822f4
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1,108 files changed
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-3358
lines changed- data
- 16s-itgdb
- 2kplus2
- 3cac
- 3dscript.server
- 3dslicer_autogenerated
- 3omics
- 4mcpred-el
- 4see
- aasra
- abawaca
- abcstats
- abi2link
- abm-tki
- abm
- abpoa
- aceapi
- aces-conservation
- acp_ms
- acpred-laf
- acsni
- adabmdca
- admetlab
- admixsim2
- affymetrix_netaffx_analysis_center
- afst
- agat
- aide-image
- aime
- aiso
- alignstein
- allegro
- alpha-tri
- alphadrop
- alphafold_2
- alphaimpute
- alphamap
- alphampsim
- alpha
- als
- alvin
- amf
- amused
- amvoc
- anatomysketch
- aneuvis
- anglerfish
- angsd-wrapper
- animal_tfdb
- anndata
- annosine
- antarna
- aqua-duct
- aquadesign
- arachnoserver
- arbic
- arnaque
- arrowsam
- artic
- asfold-dnn
- asja
- astherisc
- astral
- atacannor
- ataqv
- atbppred
- atc-nlsp
- atlasbrex
- atropos
- autoencoder-based_cluster_ensembles
- b3db
- baget
- baldr
- bamm
- bamstats
- banana_genome_hub
- band_dyn_prog
- batcave
- batch-mask
- batmeth
- bayesherg
- bcbiogff
- bcigepred
- bcyto
- beable-gps
- beastiary
- beatsonlab-microbialgenomics
- begonia
- bertrand
- bgc
- bglm
- bglr
- bigbrainwarp
- bimm_sc
- binlorry
- bio-cigar
- bio2bel
- bioautoml
- biobambam
- biobb_adapters
- biobox
- biobtree
- biocarta
- bioconda2biocontainer
- bioconductor-faahko
- bioconductor-fis
- bioconductor-gagedata
- bioconductor-pepdat
- bioconductor-snageedata
- biocontext
- bioen
- bioepic
- biojs-vis-circularfv
- biomappings
- bionic
- biopet-vcfstats
- biophysics
- biopig
- biorepository_portal_toolkit
- biovae
- biscuit
- bitqt
- bitr-unet
- bitsc2
- bless
- blmm
- blobtools
- blomaps
- bookend
- boolspace
- boss
- bp
- brain_uk
- brainpalmseq
- brainspace
- branenet
- bsfinder
- bsp-slim
- bttcmp
- bwapy
- bx-python
- cafe5
- cafe
- cagee
- caldera
- cam2fib
- camap
- candi_integrator
- captor
- carna
- carthagene
- casee
- casper_merging
- casp
- castles
- cat-net
- cat_bins
- cat_chemical
- catrapid_signature
- caves
- cbt
- ccrxp
- ccsol
- cddb
- cdna_cupcake
- celldepot
- celldrift
- cellhashr
- cellsnake
- centreseq
- cg-cat
- cgmlst-dists
- cgpbigwig
- chanjo
- chemsar
- chip-array
- chisel
- chromdmm
- chunked-scatter
- cif
- ciguide
- cimi-ethiopia
- circminer
- circompara2
- classifierc
- clevrvis
- click
- clinvar_autogenerated
- clinvar
- clip
- clmb
- clobnet
- clonalframeml
- clonaltree_b_cell
- cloudasm
- clustersheep
- cnn-peppred
- cntseg
- co-correcting
- cocoa_genome_hub
- codifold
- coffee_genome_hub
- coffeeprot
- cogent
- coinstac
- cojac
- collbook
- combiroc
- combpdx
- comm-ssup4_sup
- comparative-annotation-toolkit
- compil
- complet_plus
- compositedriver
- contaminationx
- contourv1
- contourv2
- coprarna
- corgi
- cornas
- coseq
- cosmic
- cottonmd
- coverm
- covidanno
- covidex
- coxpresdb
- cpinsim
- cram-js
- crh
- crimson
- crisflash
- crisp_metabolomics
- crispr_grant
- crisprcasfinder_autogenerated
- crisprcasfinder
- crisprcasidentifier
- crisprcas
- crisprfinder
- crisprloci
- crisprmap
- cromwell
- crossalive
- cryfa
- csccp
- csrep
- ctat-mutations
- cts
- cubids
- cuda-meme
- cwl_training
- cwl_vm_environment
- cyanorak
- cytoconverter
- cyvcf2
- cyvcf
- d-lnc
- daligner
- dammit
- dangertrack
- dart
- datma
- dbbip
- dbsts
- dbvar
- dcm
- ddt
- deap
- dear_diasupxmbd_sup
- deep-drm
- deep_ksuccsite
- deepauc
- deepcys
- deeplncpro
- deeppervar
- deepreal
- deepscm
- deepselex
- deepst
- deepsurf
- deeptoa
- defined-proteins
- dendropy
- denvis
- depth
- desp
- desso
- dexom
- dfbp
- dia
- digchem
- digepred
- digsee
- dima_3.0
- dima_domain_interaction_map
- dima
- dindel
- dira
- disco_dsr
- dissco
- disulfind
- dkfz-bias-filter
- dlcpar
- dmpnet
- dna_baser
- dnamclassmeta
- do-conv
- dockecr
- drcon
- drnet
- dsac
- dug
- dxm
- dyedb
- e-gp
- e-scape
- easy2hard
- eccsplorer
- echtvar
- eco-collectf
- ecotranslearn
- edittag
- effectivet3
- efmsdti
- egfi
- eigenstratdatabasetools
- electronic_pcr
- em-hiv
- ematlas
- endotime
- enhancer-if
- enrichm
- envemind
- epic2
- epiconv
- epidish_autogenerated
- epidish
- epifilter
- epinano
- epitope-evaluator
- equisim
- ericscript
- es3
- et-score
- evag
- evatool
- ewas_catalog
- ewastools
- exhaufs
- expontum
- ezcancertarget
- facets
- faltwerk
- fam
- fast-hbr
- fasta3
- fasta_to_phylip
- fastahack
- fastool
- fastproject
- fastq-pair
- fastq_utils
- fastqc
- fbmsnet
- fcirc
- fec
- feednet
- ff
- fgsea
- filtlong
- fitdevo
- flipper
- flt3-itd
- focal
- foodmicrobionet
- fpa
- fpem
- fpm
- fr-unet
- fragler
- frtpred
- funannotate
- fungarium
- gaemda
- galaxy-workflow-executor
- galaxydomdock
- galaxygpcrloop
- galaxyheteromer
- gamp
- gatemultiplex
- gauser
- gboosting
- gbs-sbg
- gcnfold
- gcsenet
- gcua
- gdc-client
- gecko-csb
- gecko-mgv
- gecko
- gecoviz
- ged_map
- gemma
- gen-era_toolbox
- genclip
- genebasis
- genecloudomics
- genefatt
- genefisher2
- genetribe
- gentree
- geoboost
- get_homologues
- getorganelle
- gfastats
- ggtranscript
- ggtree
- gigwa
- gm_gcn
- gnomic
- goalign
- goat
- gonuts
- gp2s
- gpcr-ssfe
- gpcr_panel
- gpcrdb
- gps2space
- grape_pipeline
- graphlan
- graphtgi
- greenphyldb
- gsan
- gsca_cancer
- gvcftools
- gwas3d
- gxd
- h3agwas
- hairpin_annotation
- halsynteny
- hclc-fc
- hdam
- helixcorr
- hera
- hfoapp
- hgvbase
- hicres
- hierfit
- hifens
- higdb
- higwas
- hiscf
- histome
- hla_clus
- hlapers
- homs_tc
- hordb
- hproteome-bsite
- hreexplorer
- hribo
- hrwr
- hsnet
- htrgene
- huardb
- hybphaser
- hyperbeta
- hypro
- i2d_r
- icbatlas
- ichespa
- icomic
- iddrra
- ideal_rna
- ideepc
- idef-pseraac
- idpconformergenerator
- ifeature
- ifit
- igv
- ihrw
- iht
- ijoq
- immunoaizer
- inforna
- intarna
- interleafq
- interva-5
- ion-to-image
- ionflow
- ipathwayguide
- ipyrad
- irgo
- isotools
- itcep
- iucn_sim
- jali
- jcvi
- jmbe.v13i2.414
- jmbe.v14i1.494
- jmztab-m
- jorca
- jupytope
- k-pax
- kage
- kaptive
- kebabs
- kimma
- kmerstream
- knot-asm-analysis
- knowpulse
- kombat
- labrat
- lambda
- learnmsa
- legsta
- lfqc
- libomexmeta
- liftoff
- likeltd
- limetr
- lindeconseq
- linkedimm
- list_ontologies
- lme4gs
- loftk
- lrbinner
- lrmotifs
- lsd
- lsmmd-ma
- ltm
- maaper
- mabellini
- macer
- macrel
- macs
- magallanes
- magecomet
- magicalrsq
- mapbayr
- mapi
- mapsplice
- markerhub
- markov_clustering
- marna
- massivefold
- mastro
- maui
- mbpa
- mcl-caw
- mcmicro
- mdbuilder
- mdgf-mcec
- mego_pay
- memtrax
- mendeliht.jl
- mepp
- meqa
- mercat
- meta-4mcpred
- meta-gecko
- meta-storms
- metabcombiner
- metabovariation
- metacortex
- metafetcher
- metaldetector
- metamaps
- metaphors
- methyldackel
- mfdp
- mg-net
- mgenomesubtractor
- mgreml
- mhadti
- mhcnames
- microbiomegwas
- minimap2
- minto
- minys
- mir2go
- miracle-rna
- mircat2
- mircat
- mireya
- mirprof
- mirtop
- mixs-sa
- mkdcnet
- mlgl-mp
- mlplasmids
- mmcms
- mminp
- mml
- mobilomefinder
- mocafe
- model-m
- modmatcher
- modtect
- modularboost
- mojitoo
- mol2context-vec
- moments
- monago
- monovar
- moods
- morca
- morphdata
- mosdef-cassandra
- most-dl
- motilitai
- mountainclimber
- mowserv
- mparce
- mpradecoder
- mrcip
- mreps
- mrireco
- mrmassaydb
- ms-hbm
- ms2lda
- msifinder
- msi
- msldock
- msnet-4mc
- msnovelist
- msu-net
- mtctscan
- mtg2
- mucnv
- muffin-drug
- multi-omics_visualization_platform
- multimed
- multiverse
- music-deconvolution
- mutexsl
- mvp_autogenerated
- mvp_a
- mwga-utils
- nanoforms
- nanoporeata
- nanortax
- nanotrf
- napp
- ncbi_bookshelf
- neat
- nebcutter
- netstrat
- nf-core-taxprofiler
- novoplasty
- npomix
- ntlink
- ntsm
- nucgen
- nucleofinder
- nuparm-plus
- oakvar
- odgi
- off-target_pipeline
- og
- ologram
- omicsev
- omim
- omnipose
- oncocnv
- onepetri
- onetool
- ontoquest_ws
- ontoquestmain
- open-cravat
- openastexviewer
- openbabel
- opentargets-urlzsource
- optm
- orsum
- orthofinder
- osanalyzer
- osse
- owas
- p-binder
- p-smoother
- pafway
- paiso-seq
- panda_associations
- pangpcr
- parallelgwas
- parameciumdb
- pass
- patchperpixmatch
- pbaa
- pbine
- pcadmix
- pcat
- pcn-miner
- peakhood
- peaksat
- pedibd
- pegs
- pepquery
- peptideranger
- peptipedia
- perl-config-any
- perl-datetime-locale
- perl-datetime-timezone
- perl-dbd-pg
- perl-email-simple
- perl-file-which
- perl-indirect
- perl-io-compress
- perl-list-moreutils
- perl-mozilla-ca
- perl-namespace-autoclean
- perl-net-ssleay
- perl-perl4-corelibs
- perl-test-classapi
- pgg_sv
- pha4ge_sars-cov-2_contextual_data_specification
- phagesdb
- phenocam
- phenocomb
- phirbo
- phylip
- phylocloud
- phylodeep
- phylogeny_io
- phylomedb_v3.0
- phylomedb
- phylonium
- phylopgm
- phylovar
- phyphy
- physicool
- phytochemdb
- phytooracle
- picall
- picnic
- picrust
- pictograph
- pic
- pileometh
- pilon
- pimco
- pitufo
- pjd
- plant-disease_relations
- plant-rlk-rlp
- plantexp
- plantnatsdb
- plassembler
- plateeditor
- plottwist
- pmap-cutdb
- pmce
- pmlb
- pneumocat
- pngseqr
- pocketannotate
- polarmorphism
- polyatailor
- poms
- popsicler
- portcullis
- possumsearch2
- power.he
- powergxe
- pp-sketchlib
- ppms
- preacrs
- precancell
- precision.array
- predprin
- preseq
- presto
- primerxl
- prism-ppi
- prismnet
- pro-bs
- probe
- procarbdb
- prodoc
- profcom
- prognosit
- promk
- promotech
- prompredict
- pronto
- prophyle
- prose
- prostrip
- proteinguru
- proteogan
- proteomill
- protpy
- protview
- proximid
- pseudodrift
- pseudofinder
- psg-bar
- psiz
- psnod
- psrna
- psupertime
- psygenet
- pub2tools2020__hw_test
- punctatools
- py-mcmd
- pyascore
- pyasr
- pycoqc
- pyfoomb
- pygtftk
- pyloh
- pymonnto
- pymvpd
- pyranges
- pyrat
- pyrocleaner
- pyrsd-coev
- pysustain
- python-newick
- pyzebrascope
- qarip
- qc-chain
- qgis
- qlattice
- qpoweredcompound2denovodrugpropmax
- qsalignweb
- qsar
- qt-gild
- quake
- qualimap
- quantisnp
- quco
- query_phenomizer
- quickped
- r-amap
- r-batch
- r-bcbiornaseq
- r-idr
- r-loop
- r-sgtr
- r-traminer
- raacfold
- ralps
- randepict
- rapifilt
- rappas
- raptorx-complexcontact
- rbp-tstl
- rcx
- rdbke
- reactomefiviz
- reactome
- read-spam
- realphy
- rebaler
- recruitploteasy
- redoak
- reet
- refbool
- regeo
- regscan
- repenrich
- rerconverge
- resfinder
- resistancebank.org
- reslt
- respan
- review_blockchain_architecture_consensus_protocols
- rfmix
- rformer
- rfsa
- rgai
- ribocleaner
- riboview
- ribowaltz
- rice_genome_hub
- rldock
- rmcorrshiny
- rmlst_api
- rnabrowse
- rnalight
- rnanetmotif
- rnatips
- rnmf
- rosettaddgprediction
- rpgd
- rpicoo
- rpinbase
- rresolver
- rsnapsim
- rswebtool
- rtg_core
- rtp
- sambamba
- samba
- samdude
- samirix
- saphir
- saspector
- saturn
- sbg-cwl-runner
- sbmate
- scbean
- scbkap
- scgtm
- sch-net
- schema
- schicsrs
- schistox
- schpl
- sciddo
- scikit-activeml
- scint
- sciope
- scipion_pkpd
- scisorwiz
- sclds2
- scline
- sclrtc
- scoit
- scopy
- scregulocity
- scsensitivegenedefine
- scshaper
- scsimclassify
- scso
- sctenifoldknk
- sctim
- sdimpute
- sdm6a
- seamote
- searchgui
- secapr
- segdgan
- sempl
- senies
- sepal
- sepas
- sepia-sim
- seqenhdl
- seqfu
- seqprop
- seqrepo
- sequeltools
- sequencevariantanalyzer
- sequnwinder
- seqwho
- serac
- sergio
- serrana
- sg-lstm
- sgi-id
- sgtr
- shepherd
- shinyarchr_uio
- shinybn
- shinydiversity
- shinymb
- shovill-se
- si-fi
- sibeliaz
- silclod
- siloco
- simairr
- simbsig
- simple3.0
- simplogo
- simrare
- simultant
- single
- sispo
- skimpy
- slda
- sleep
- slicembler
- slow5curl
- smallareamapp
- smart2p
- smiter
- snodb
- snomed_ct_software
- snopy
- snp-pipeline
- snpadomain
- snpbox
- softparsmap
- sonneityping
- sophie
- sopp
- southgreen
- spacepharer
- sparkec
- spascer
- speq
- spinnaker
- splicing_express
- splnmtf
- spot-disorder-single
- spot-struct-dna
- spot-struct-rna
- sprint
- ssvqc
- stallion
- standena
- stargazer_py
- start-asap
- stells
- stir
- stoatydive
- storm-riboregulator
- storyboardr
- strainscan
- straitrazor
- strelka
- stride
- strongestpath
- subseqhash
- sugarcane_genome_hub
- sulfatlas
- suns
- superdsm
- sure
- survtools
- svdb
- swan
- swissdock
- synapsej
- synr
- syntalinker
- synttax
- t-analyst
- ta-si_prediction
- tag-db
- tangent
- tango
- taxmapper
- taxonomy_ranks
- taxonomy
- taxopy
- tb_variant_filter
- tblda
- tbtools
- tedsim
- tempel
- tenet
- terminodiff
- termviewer
- tetyper
- text2brain
- textformats
- the_grid
- thermometer
- throne
- timecycle
- timesweeper
- tinyfasta
- tmat
- tmhcon
- tofu
- topdb
- toppicr
- torte
- trackhub
- transat
- transcompp
- transdecoder
- transphylo
- transporttools
- transposable_element_finder
- treeknit
- treeko
- treetime
- trimal
- trinotate
- trollope
- tronco
- trycycler
- tsebra
- tume
- umierrorcorrect
- uncalled
- unfinnigan
- universc
- unmerge
- unphased
- usat
- vaeda
- variant-calling-at-scale
- varifier
- varscat
- vcascale
- vesselvio
- vilon
- virmutsig
- visielse_autogenerated
- visielse
- vissr
- wasps
- weka
- wheatmine
- wifa
- wiggler
- wisard
- xenosite
- xml2tsv
- xtea
- yacrd
- yoripred
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165 | 165 |
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166 | 166 |
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167 | 167 |
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168 |
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| 168 | + | |
169 | 169 |
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171 | 171 |
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Lines changed: 2 additions & 2 deletions
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134 | 134 |
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135 | 135 |
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136 | 136 |
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137 |
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| 137 | + | |
138 | 138 |
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183 | 183 |
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186 |
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| 186 | + | |
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Lines changed: 3 additions & 3 deletions
Original file line number | Diff line number | Diff line change | |
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131 | 131 |
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132 | 132 |
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133 | 133 |
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134 |
| - | |
| 134 | + | |
135 | 135 |
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136 | 136 |
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137 | 137 |
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279 | 279 |
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282 |
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| 282 | + | |
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328 | 328 |
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329 | 329 |
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330 | 330 |
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331 |
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| 331 | + | |
332 | 332 |
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334 | 334 |
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Lines changed: 4 additions & 4 deletions
Original file line number | Diff line number | Diff line change | |
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207 | 207 |
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208 | 208 |
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209 | 209 |
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210 |
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| 210 | + | |
211 | 211 |
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213 | 213 |
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214 |
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| 214 | + | |
215 | 215 |
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381 | 381 |
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383 | 383 |
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384 |
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| 384 | + | |
385 | 385 |
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386 | 386 |
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387 | 387 |
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388 |
| - | |
| 388 | + | |
389 | 389 |
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390 | 390 |
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391 | 391 |
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