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2.3.0: pytest is failing #89

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kloczek opened this issue Aug 28, 2022 · 27 comments
Open

2.3.0: pytest is failing #89

kloczek opened this issue Aug 28, 2022 · 27 comments

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@kloczek
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kloczek commented Aug 28, 2022

I'm packaging your module as an rpm package so I'm using the typical PEP517 based build, install and test cycle used on building packages from non-root account.

  • python3 -sBm build -w --no-isolation
  • because I'm calling build with --no-isolation I'm using during all processes only locally installed modules
  • install .whl file in </install/prefix>
  • run pytest with PYTHONPATH pointing to sitearch and sitelib inside </install/prefix>

Here is pytest output:

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.0-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.0-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra --ignore tests/test_package_info.py
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.3.0
plugins: typeguard-2.13.3
collected 91 items

tests/test_assert_isinstance.py ...                                                                                                                                  [  3%]
tests/test_base_meta_classes.py .........                                                                                                                            [ 13%]
tests/test_beartype.py ....                                                                                                                                          [ 17%]
tests/test_lib_export.py .                                                                                                                                           [ 18%]
tests/test_mypy.py FFFFFFFFFF.                                                                                                                                       [ 30%]
tests/test_ndarray.py ..........................                                                                                                                     [ 59%]
tests/test_performance.py .                                                                                                                                          [ 60%]
tests/test_pyright.py ..                                                                                                                                             [ 62%]
tests/test_recarray.py ...                                                                                                                                           [ 65%]
tests/test_shape.py .....                                                                                                                                            [ 71%]
tests/test_shape_expression.py ...                                                                                                                                   [ 74%]
tests/test_structure.py ........                                                                                                                                     [ 83%]
tests/test_structure_expression.py ........                                                                                                                          [ 92%]
tests/test_typeguard.py ....                                                                                                                                         [ 96%]
tests/test_wheel.py F..                                                                                                                                              [100%]

================================================================================= FAILURES =================================================================================
_______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_any ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_any>

    def test_mypy_accepts_ndarray_with_any(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            NDArray[Any, Any]
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:26: AssertionError
______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_shape _______________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_shape>

    def test_mypy_accepts_ndarray_with_shape(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, Shape


            NDArray[Shape["3, 3"], Any]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:39: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_structure _____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_structure>

    def test_mypy_accepts_ndarray_with_structure(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, RecArray, Structure


            NDArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:52: AssertionError
________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_function_arguments _________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_function_arguments>

    def test_mypy_accepts_ndarrays_as_function_arguments(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func(np.array([1, 2]))  # (Wrong shape though)
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:90: AssertionError
__________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_variable_hints ___________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_variable_hints>

    def test_mypy_accepts_ndarrays_as_variable_hints(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray


            arr: NDArray[Any, Any] = np.array([1, 2, 3])
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:104: AssertionError
________________________________________________________________ MyPyTest.test_mypy_accepts_nptyping_types _________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_nptyping_types>

    def test_mypy_accepts_nptyping_types(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            import numpy.typing as npt
            from nptyping import (
                NDArray,
                Number,
                Bool,
                Bool8,
                Object,
                Object0,
                Datetime64,
                Integer,
                SignedInteger,
                Int8,
                Int16,
                Int32,
                Int64,
                Byte,
                Short,
                IntC,
                IntP,
                Int0,
                Int,
                LongLong,
                Timedelta64,
                UnsignedInteger,
                UInt8,
                UInt16,
                UInt32,
                UInt64,
                UByte,
                UShort,
                UIntC,
                UIntP,
                UInt0,
                UInt,
                ULongLong,
                Inexact,
                Floating,
                Float16,
                Float32,
                Float64,
                Half,
                Single,
                Double,
                Float,
                LongDouble,
                LongFloat,
                ComplexFloating,
                Complex64,
                Complex128,
                CSingle,
                SingleComplex,
                CDouble,
                Complex,
                CFloat,
                CLongDouble,
                CLongFloat,
                LongComplex,
                Flexible,
                Void,
                Void0,
                Character,
                Bytes,
                String,
                Bytes0,
                Unicode,
                Str0,
            )

            NDArray[Any, Number]
            NDArray[Any, Bool]
            NDArray[Any, Bool8]
            NDArray[Any, Object]
            NDArray[Any, Object0]
            NDArray[Any, Datetime64]
            NDArray[Any, Integer]
            NDArray[Any, SignedInteger]
            NDArray[Any, Int8]
            NDArray[Any, Int16]
            NDArray[Any, Int32]
            NDArray[Any, Int64]
            NDArray[Any, Byte]
            NDArray[Any, Short]
            NDArray[Any, IntC]
            NDArray[Any, IntP]
            NDArray[Any, Int0]
            NDArray[Any, Int]
            NDArray[Any, LongLong]
            NDArray[Any, Timedelta64]
            NDArray[Any, UnsignedInteger]
            NDArray[Any, UInt8]
            NDArray[Any, UInt16]
            NDArray[Any, UInt32]
            NDArray[Any, UInt64]
            NDArray[Any, UByte]
            NDArray[Any, UShort]
            NDArray[Any, UIntC]
            NDArray[Any, UIntP]
            NDArray[Any, UInt0]
            NDArray[Any, UInt]
            NDArray[Any, ULongLong]
            NDArray[Any, Inexact]
            NDArray[Any, Floating]
            NDArray[Any, Float16]
            NDArray[Any, Float32]
            NDArray[Any, Float64]
            NDArray[Any, Half]
            NDArray[Any, Single]
            NDArray[Any, Double]
            NDArray[Any, Float]
            NDArray[Any, LongDouble]
            NDArray[Any, LongFloat]
            NDArray[Any, ComplexFloating]
            NDArray[Any, Complex64]
            NDArray[Any, Complex128]
            NDArray[Any, CSingle]
            NDArray[Any, SingleComplex]
            NDArray[Any, CDouble]
            NDArray[Any, Complex]
            NDArray[Any, CFloat]
            NDArray[Any, CLongDouble]
            NDArray[Any, CLongFloat]
            NDArray[Any, LongComplex]
            NDArray[Any, Flexible]
            NDArray[Any, Void]
            NDArray[Any, Void0]
            NDArray[Any, Character]
            NDArray[Any, Bytes]
            NDArray[Any, String]
            NDArray[Any, Bytes0]
            NDArray[Any, Unicode]
            NDArray[Any, Str0]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:312: AssertionError
__________________________________________________________________ MyPyTest.test_mypy_accepts_numpy_types __________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_numpy_types>

    def test_mypy_accepts_numpy_types(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray
            import numpy as np


            NDArray[Any, np.dtype[np.int_]]
            NDArray[Any, np.dtype[np.float_]]
            NDArray[Any, np.dtype[np.uint8]]
            NDArray[Any, np.dtype[np.bool_]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:134: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_recarray_with_structure ____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_recarray_with_structure>

    def test_mypy_accepts_recarray_with_structure(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import RecArray, Structure


            RecArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:117: AssertionError
___________________________________________________ MyPyTest.test_mypy_disapproves_ndarray_with_wrong_function_arguments ___________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_disapproves_ndarray_with_wrong_function_arguments>

    def test_mypy_disapproves_ndarray_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func("Not an array...")
        """
        )

        self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
        self.assertIn('expected "ndarray[Any, Any]"', stdout)
>       self.assertIn("Found 1 error in 1 file", stdout)
E       AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]\nnptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment\n/tmp/tmpmb3qsf1a/test_file.py:10: error: Argument 1 to "func" has incompatible type "str"; expected "ndarray[Any, Any]"  [arg-type]\nFound 2 errors in 2 files (checked 1 source file)\n'

tests/test_mypy.py:72: AssertionError
_______________________________________________________________ MyPyTest.test_mypy_knows_of_ndarray_methods ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_knows_of_ndarray_methods>

    def test_mypy_knows_of_ndarray_methods(self):
        # If MyPy knows of some arbitrary ndarray methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            arr: NDArray[Any, Any]
            arr.shape
            arr.size
            arr.sort
            arr.squeeze
            arr.transpose
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:171: AssertionError
_________________________________________________________________ WheelTest.test_wheel_is_built_correctly __________________________________________________________________

self = <tests.test_wheel.WheelTest testMethod=test_wheel_is_built_correctly>

    def test_wheel_is_built_correctly(self):
        with working_dir(_ROOT):
>           subprocess.check_output(f"{sys.executable} -m invoke wheel", shell=True)

tests/test_wheel.py:83:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib64/python3.8/subprocess.py:415: in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

input = None, capture_output = False, timeout = None, check = True, popenargs = ('/usr/bin/python3 -m invoke wheel',), kwargs = {'shell': True, 'stdout': -1}
process = <subprocess.Popen object at 0x7fe71e6e7af0>, stdout = b'', stderr = None, retcode = 1

    def run(*popenargs,
            input=None, capture_output=False, timeout=None, check=False, **kwargs):
        """Run command with arguments and return a CompletedProcess instance.

        The returned instance will have attributes args, returncode, stdout and
        stderr. By default, stdout and stderr are not captured, and those attributes
        will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.

        If check is True and the exit code was non-zero, it raises a
        CalledProcessError. The CalledProcessError object will have the return code
        in the returncode attribute, and output & stderr attributes if those streams
        were captured.

        If timeout is given, and the process takes too long, a TimeoutExpired
        exception will be raised.

        There is an optional argument "input", allowing you to
        pass bytes or a string to the subprocess's stdin.  If you use this argument
        you may not also use the Popen constructor's "stdin" argument, as
        it will be used internally.

        By default, all communication is in bytes, and therefore any "input" should
        be bytes, and the stdout and stderr will be bytes. If in text mode, any
        "input" should be a string, and stdout and stderr will be strings decoded
        according to locale encoding, or by "encoding" if set. Text mode is
        triggered by setting any of text, encoding, errors or universal_newlines.

        The other arguments are the same as for the Popen constructor.
        """
        if input is not None:
            if kwargs.get('stdin') is not None:
                raise ValueError('stdin and input arguments may not both be used.')
            kwargs['stdin'] = PIPE

        if capture_output:
            if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
                raise ValueError('stdout and stderr arguments may not be used '
                                 'with capture_output.')
            kwargs['stdout'] = PIPE
            kwargs['stderr'] = PIPE

        with Popen(*popenargs, **kwargs) as process:
            try:
                stdout, stderr = process.communicate(input, timeout=timeout)
            except TimeoutExpired as exc:
                process.kill()
                if _mswindows:
                    # Windows accumulates the output in a single blocking
                    # read() call run on child threads, with the timeout
                    # being done in a join() on those threads.  communicate()
                    # _after_ kill() is required to collect that and add it
                    # to the exception.
                    exc.stdout, exc.stderr = process.communicate()
                else:
                    # POSIX _communicate already populated the output so
                    # far into the TimeoutExpired exception.
                    process.wait()
                raise
            except:  # Including KeyboardInterrupt, communicate handled that.
                process.kill()
                # We don't call process.wait() as .__exit__ does that for us.
                raise
            retcode = process.poll()
            if check and retcode:
>               raise CalledProcessError(retcode, process.args,
                                         output=stdout, stderr=stderr)
E               subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit status 1.

/usr/lib64/python3.8/subprocess.py:516: CalledProcessError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
/usr/bin/python3: No module named invoke
============================================================================= warnings summary =============================================================================
../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_any - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dty...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_shape - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "d...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_structure - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final clas...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_function_arguments - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from fi...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_variable_hints - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final ...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_nptyping_types - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_numpy_types - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  ...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_recarray_with_structure - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final cla...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_disapproves_ndarray_with_wrong_function_arguments - AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/struc...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_knows_of_ndarray_methods - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dty...
FAILED tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly - subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit s...
================================================================ 11 failed, 80 passed, 1 warning in 41.36s =================================================================

Here is list of installed modules in build env

Package           Version
----------------- --------------
appdirs           1.4.4
attrs             22.1.0
beartype          0.10.4
Brlapi            0.8.3
build             0.8.0
codespell         2.1.0
cssselect         1.1.0
distro            1.7.0
extras            1.0.0
fixtures          4.0.0
gpg               1.17.1-unknown
iniconfig         1.1.1
libcomps          0.1.18
louis             3.22.0
lxml              4.9.1
mypy              0.971
mypy-extensions   0.4.3
nodeenv           1.7.0
numpy             1.23.1
packaging         21.3
pbr               5.9.0
pep517            0.12.0
pip               22.2.1
pluggy            1.0.0
py                1.11.0
PyGObject         3.42.2
pyparsing         3.0.9
pyright           1.1.268
pytest            7.1.2
python-dateutil   2.8.2
rpm               4.17.0
scour             0.38.2
setuptools        65.3.0
six               1.16.0
testtools         2.5.0
tomli             2.0.1
typeguard         2.13.3
typing_extensions 4.2.0
wheel             0.37.1
@kloczek
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kloczek commented Aug 28, 2022

With installed invoke, lexicon, pyyaml and fluidity-sm

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.0-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.0-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra --ignore tests/test_package_info.py
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.3.0
plugins: typeguard-2.13.3
collected 91 items

tests/test_assert_isinstance.py ...                                                                                                                                  [  3%]
tests/test_base_meta_classes.py .........                                                                                                                            [ 13%]
tests/test_beartype.py ....                                                                                                                                          [ 17%]
tests/test_lib_export.py .                                                                                                                                           [ 18%]
tests/test_mypy.py FFFFFFFFFF.                                                                                                                                       [ 30%]
tests/test_ndarray.py ..........................                                                                                                                     [ 59%]
tests/test_performance.py .                                                                                                                                          [ 60%]
tests/test_pyright.py ..                                                                                                                                             [ 62%]
tests/test_recarray.py ...                                                                                                                                           [ 65%]
tests/test_shape.py .....                                                                                                                                            [ 71%]
tests/test_shape_expression.py ...                                                                                                                                   [ 74%]
tests/test_structure.py ........                                                                                                                                     [ 83%]
tests/test_structure_expression.py ........                                                                                                                          [ 92%]
tests/test_typeguard.py ....                                                                                                                                         [ 96%]
tests/test_wheel.py F..                                                                                                                                              [100%]

================================================================================= FAILURES =================================================================================
_______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_any ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_any>

    def test_mypy_accepts_ndarray_with_any(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            NDArray[Any, Any]
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:26: AssertionError
______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_shape _______________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_shape>

    def test_mypy_accepts_ndarray_with_shape(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, Shape


            NDArray[Shape["3, 3"], Any]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:39: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_structure _____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_structure>

    def test_mypy_accepts_ndarray_with_structure(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, RecArray, Structure


            NDArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:52: AssertionError
________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_function_arguments _________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_function_arguments>

    def test_mypy_accepts_ndarrays_as_function_arguments(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func(np.array([1, 2]))  # (Wrong shape though)
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:90: AssertionError
__________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_variable_hints ___________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_variable_hints>

    def test_mypy_accepts_ndarrays_as_variable_hints(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray


            arr: NDArray[Any, Any] = np.array([1, 2, 3])
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:104: AssertionError
________________________________________________________________ MyPyTest.test_mypy_accepts_nptyping_types _________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_nptyping_types>

    def test_mypy_accepts_nptyping_types(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            import numpy.typing as npt
            from nptyping import (
                NDArray,
                Number,
                Bool,
                Bool8,
                Object,
                Object0,
                Datetime64,
                Integer,
                SignedInteger,
                Int8,
                Int16,
                Int32,
                Int64,
                Byte,
                Short,
                IntC,
                IntP,
                Int0,
                Int,
                LongLong,
                Timedelta64,
                UnsignedInteger,
                UInt8,
                UInt16,
                UInt32,
                UInt64,
                UByte,
                UShort,
                UIntC,
                UIntP,
                UInt0,
                UInt,
                ULongLong,
                Inexact,
                Floating,
                Float16,
                Float32,
                Float64,
                Half,
                Single,
                Double,
                Float,
                LongDouble,
                LongFloat,
                ComplexFloating,
                Complex64,
                Complex128,
                CSingle,
                SingleComplex,
                CDouble,
                Complex,
                CFloat,
                CLongDouble,
                CLongFloat,
                LongComplex,
                Flexible,
                Void,
                Void0,
                Character,
                Bytes,
                String,
                Bytes0,
                Unicode,
                Str0,
            )

            NDArray[Any, Number]
            NDArray[Any, Bool]
            NDArray[Any, Bool8]
            NDArray[Any, Object]
            NDArray[Any, Object0]
            NDArray[Any, Datetime64]
            NDArray[Any, Integer]
            NDArray[Any, SignedInteger]
            NDArray[Any, Int8]
            NDArray[Any, Int16]
            NDArray[Any, Int32]
            NDArray[Any, Int64]
            NDArray[Any, Byte]
            NDArray[Any, Short]
            NDArray[Any, IntC]
            NDArray[Any, IntP]
            NDArray[Any, Int0]
            NDArray[Any, Int]
            NDArray[Any, LongLong]
            NDArray[Any, Timedelta64]
            NDArray[Any, UnsignedInteger]
            NDArray[Any, UInt8]
            NDArray[Any, UInt16]
            NDArray[Any, UInt32]
            NDArray[Any, UInt64]
            NDArray[Any, UByte]
            NDArray[Any, UShort]
            NDArray[Any, UIntC]
            NDArray[Any, UIntP]
            NDArray[Any, UInt0]
            NDArray[Any, UInt]
            NDArray[Any, ULongLong]
            NDArray[Any, Inexact]
            NDArray[Any, Floating]
            NDArray[Any, Float16]
            NDArray[Any, Float32]
            NDArray[Any, Float64]
            NDArray[Any, Half]
            NDArray[Any, Single]
            NDArray[Any, Double]
            NDArray[Any, Float]
            NDArray[Any, LongDouble]
            NDArray[Any, LongFloat]
            NDArray[Any, ComplexFloating]
            NDArray[Any, Complex64]
            NDArray[Any, Complex128]
            NDArray[Any, CSingle]
            NDArray[Any, SingleComplex]
            NDArray[Any, CDouble]
            NDArray[Any, Complex]
            NDArray[Any, CFloat]
            NDArray[Any, CLongDouble]
            NDArray[Any, CLongFloat]
            NDArray[Any, LongComplex]
            NDArray[Any, Flexible]
            NDArray[Any, Void]
            NDArray[Any, Void0]
            NDArray[Any, Character]
            NDArray[Any, Bytes]
            NDArray[Any, String]
            NDArray[Any, Bytes0]
            NDArray[Any, Unicode]
            NDArray[Any, Str0]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:312: AssertionError
__________________________________________________________________ MyPyTest.test_mypy_accepts_numpy_types __________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_numpy_types>

    def test_mypy_accepts_numpy_types(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray
            import numpy as np


            NDArray[Any, np.dtype[np.int_]]
            NDArray[Any, np.dtype[np.float_]]
            NDArray[Any, np.dtype[np.uint8]]
            NDArray[Any, np.dtype[np.bool_]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:134: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_recarray_with_structure ____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_recarray_with_structure>

    def test_mypy_accepts_recarray_with_structure(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import RecArray, Structure


            RecArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:117: AssertionError
___________________________________________________ MyPyTest.test_mypy_disapproves_ndarray_with_wrong_function_arguments ___________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_disapproves_ndarray_with_wrong_function_arguments>

    def test_mypy_disapproves_ndarray_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func("Not an array...")
        """
        )

        self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
        self.assertIn('expected "ndarray[Any, Any]"', stdout)
>       self.assertIn("Found 1 error in 1 file", stdout)
E       AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]\nnptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment\n/tmp/tmpztiv4ptc/test_file.py:10: error: Argument 1 to "func" has incompatible type "str"; expected "ndarray[Any, Any]"  [arg-type]\nFound 2 errors in 2 files (checked 1 source file)\n'

tests/test_mypy.py:72: AssertionError
_______________________________________________________________ MyPyTest.test_mypy_knows_of_ndarray_methods ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_knows_of_ndarray_methods>

    def test_mypy_knows_of_ndarray_methods(self):
        # If MyPy knows of some arbitrary ndarray methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = _check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            arr: NDArray[Any, Any]
            arr.shape
            arr.size
            arr.sort
            arr.squeeze
            arr.transpose
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  [misc]
E       nptyping/structure.pyi:37: note: Error code "misc" not covered by "type: ignore" comment
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:171: AssertionError
_________________________________________________________________ WheelTest.test_wheel_is_built_correctly __________________________________________________________________

self = <tests.test_wheel.WheelTest testMethod=test_wheel_is_built_correctly>

    def test_wheel_is_built_correctly(self):
        with working_dir(_ROOT):
>           subprocess.check_output(f"{sys.executable} -m invoke wheel", shell=True)

tests/test_wheel.py:83:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib64/python3.8/subprocess.py:415: in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

input = None, capture_output = False, timeout = None, check = True, popenargs = ('/usr/bin/python3 -m invoke wheel',), kwargs = {'shell': True, 'stdout': -1}
process = <subprocess.Popen object at 0x7febba38a490>, stdout = b'Installing dependencies into: .venv3.8.13\n', stderr = None, retcode = 127

    def run(*popenargs,
            input=None, capture_output=False, timeout=None, check=False, **kwargs):
        """Run command with arguments and return a CompletedProcess instance.

        The returned instance will have attributes args, returncode, stdout and
        stderr. By default, stdout and stderr are not captured, and those attributes
        will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.

        If check is True and the exit code was non-zero, it raises a
        CalledProcessError. The CalledProcessError object will have the return code
        in the returncode attribute, and output & stderr attributes if those streams
        were captured.

        If timeout is given, and the process takes too long, a TimeoutExpired
        exception will be raised.

        There is an optional argument "input", allowing you to
        pass bytes or a string to the subprocess's stdin.  If you use this argument
        you may not also use the Popen constructor's "stdin" argument, as
        it will be used internally.

        By default, all communication is in bytes, and therefore any "input" should
        be bytes, and the stdout and stderr will be bytes. If in text mode, any
        "input" should be a string, and stdout and stderr will be strings decoded
        according to locale encoding, or by "encoding" if set. Text mode is
        triggered by setting any of text, encoding, errors or universal_newlines.

        The other arguments are the same as for the Popen constructor.
        """
        if input is not None:
            if kwargs.get('stdin') is not None:
                raise ValueError('stdin and input arguments may not both be used.')
            kwargs['stdin'] = PIPE

        if capture_output:
            if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
                raise ValueError('stdout and stderr arguments may not be used '
                                 'with capture_output.')
            kwargs['stdout'] = PIPE
            kwargs['stderr'] = PIPE

        with Popen(*popenargs, **kwargs) as process:
            try:
                stdout, stderr = process.communicate(input, timeout=timeout)
            except TimeoutExpired as exc:
                process.kill()
                if _mswindows:
                    # Windows accumulates the output in a single blocking
                    # read() call run on child threads, with the timeout
                    # being done in a join() on those threads.  communicate()
                    # _after_ kill() is required to collect that and add it
                    # to the exception.
                    exc.stdout, exc.stderr = process.communicate()
                else:
                    # POSIX _communicate already populated the output so
                    # far into the TimeoutExpired exception.
                    process.wait()
                raise
            except:  # Including KeyboardInterrupt, communicate handled that.
                process.kill()
                # We don't call process.wait() as .__exit__ does that for us.
                raise
            retcode = process.poll()
            if check and retcode:
>               raise CalledProcessError(retcode, process.args,
                                         output=stdout, stderr=stderr)
E               subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit status 127.

/usr/lib64/python3.8/subprocess.py:516: CalledProcessError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
/bin/bash: line 1: .venv3.8.13/bin/python: No such file or directory
============================================================================= warnings summary =============================================================================
../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_any - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dty...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_shape - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "d...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_structure - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final clas...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_function_arguments - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from fi...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_variable_hints - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final ...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_nptyping_types - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_numpy_types - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dtype"  ...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_recarray_with_structure - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final cla...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_disapproves_ndarray_with_wrong_function_arguments - AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/struc...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_knows_of_ndarray_methods - AssertionError: 0 != 1 : nptyping/structure.pyi:37: error: Cannot inherit from final class "dty...
FAILED tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly - subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit s...
================================================================ 11 failed, 80 passed, 1 warning in 39.75s =================================================================

@ramonhagenaars
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Owner

The majority of the errors are caused by a difference in the numpy version that is locked in the constraints.txt (1.22.4) and the one you have (1.23.1); apparently numpy marked dtype with @final in that new version. Would it work for you to pin numpy to 1.22.4 until I manage to patch this?

The other error I read is the failure of this command:

/usr/bin/python3 -m invoke wheel

with

/usr/bin/python3: No module named invoke

Can you doublecheck that invoke has been installed on /usr/bin/python3?

@kloczek
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Author

kloczek commented Aug 28, 2022

Would it work for you to pin numpy to 1.22.4 until I manage to patch this?

Just checked.

[tkloczko@pers-jacek SPECS]$ grep 'BuildRequires.*python3dist(numpy)' python*
python-cairocffi.spec:#BuildRequires:   python3dist(numpy)
python-cftime.spec:BuildRequires:       python3dist(numpy)
python-colorspacious.spec:BuildRequires:        python3dist(numpy)
python-cython.spec:BuildRequires:       python3dist(numpy)
python-django.spec:BuildRequires:       python3dist(numpy)
python-fsspec.spec:BuildRequires:       python3dist(numpy)
python-hypothesis.spec:BuildRequires:   python3dist(numpy)
python-ipykernel.spec:BuildRequires:    python3dist(numpy)
python-ipyparallel.spec:BuildRequires:  python3dist(numpy)
python-ipython.spec:BuildRequires:      python3dist(numpy)
python-joblib.spec:BuildRequires:       python3dist(numpy)
python-matplotlib.spec:BuildRequires:   python3dist(numpy)
python-myst-nb.spec:BuildRequires:      python3dist(numpy)
python-nb2plots.spec:#BuildRequires:    python3dist(numpy)
python-nptyping.spec:BuildRequires:     python3dist(numpy)
python-pandas.spec:BuildRequires:       python3dist(numpy)
python-partd.spec:BuildRequires:        python3dist(numpy)      >= 1.9
python-pillow.spec:BuildRequires:       python3dist(numpy)
python-pytest-randomly.spec:BuildRequires:      python3dist(numpy)
python-pythran.spec:BuildRequires:      python3dist(numpy)
python-scipy.spec:BuildRequires:        python3dist(numpy)
python-sympy.spec:BuildRequires:        python3dist(numpy)
python-tabulate.spec:BuildRequires:     python3dist(numpy)
python-websockify.spec:BuildRequires:   python3dist(numpy)

None of those modules has any problems with latest numpy.
Do you have any plans to update for latest numpy?🤔

Just in case .. so in your opinion those fails are caused by numpy?🤔

/usr/bin/python3: No module named invoke

I've alredy sorted out that and lookd like that missig dependency had no connections with those fails.

@ramonhagenaars
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Owner

Do you have any plans to update for latest numpy?🤔

Yes I do plan to find a patch for this, hopefully in the coming days.

Just in case .. so in your opinion those fails are caused by numpy?🤔

At least most of them are caused by numpy marking dtype as final in 1.23.1 (that was not final in 1.22.4), which some type of nptyping inherits from, which causes mypy to complain, which causes those tests to fail.

@ramonhagenaars
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I just released a patch that should take care of most of your errors. Can you please check again against v2.3.1?

@kloczek
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kloczek commented Aug 30, 2022

Just tested new version

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.1-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.3.1-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra --ignore tests/test_package_info.py
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.3.1
plugins: typeguard-2.13.3
collected 92 items

tests/test_assert_isinstance.py ...                                                                                                                                  [  3%]
tests/test_base_meta_classes.py .........                                                                                                                            [ 13%]
tests/test_beartype.py ....                                                                                                                                          [ 17%]
tests/test_lib_export.py .                                                                                                                                           [ 18%]
tests/test_mypy.py ...........                                                                                                                                       [ 30%]
tests/test_ndarray.py ..........................                                                                                                                     [ 58%]
tests/test_performance.py .                                                                                                                                          [ 59%]
tests/test_pyright.py ..                                                                                                                                             [ 61%]
tests/test_recarray.py ...                                                                                                                                           [ 65%]
tests/test_shape.py ......                                                                                                                                           [ 71%]
tests/test_shape_expression.py ...                                                                                                                                   [ 75%]
tests/test_structure.py ........                                                                                                                                     [ 83%]
tests/test_structure_expression.py ........                                                                                                                          [ 92%]
tests/test_typeguard.py ....                                                                                                                                         [ 96%]
tests/test_wheel.py F..                                                                                                                                              [100%]

================================================================================= FAILURES =================================================================================
_________________________________________________________________ WheelTest.test_wheel_is_built_correctly __________________________________________________________________

self = <tests.test_wheel.WheelTest testMethod=test_wheel_is_built_correctly>

    def test_wheel_is_built_correctly(self):
        with working_dir(_ROOT):
>           subprocess.check_output(f"{sys.executable} -m invoke wheel", shell=True)

tests/test_wheel.py:83:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib64/python3.8/subprocess.py:415: in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

input = None, capture_output = False, timeout = None, check = True, popenargs = ('/usr/bin/python3 -m invoke wheel',), kwargs = {'shell': True, 'stdout': -1}
process = <subprocess.Popen object at 0x7f57abaab700>, stdout = b'Installing dependencies into: .venv3.8.13\n', stderr = None, retcode = 127

    def run(*popenargs,
            input=None, capture_output=False, timeout=None, check=False, **kwargs):
        """Run command with arguments and return a CompletedProcess instance.

        The returned instance will have attributes args, returncode, stdout and
        stderr. By default, stdout and stderr are not captured, and those attributes
        will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.

        If check is True and the exit code was non-zero, it raises a
        CalledProcessError. The CalledProcessError object will have the return code
        in the returncode attribute, and output & stderr attributes if those streams
        were captured.

        If timeout is given, and the process takes too long, a TimeoutExpired
        exception will be raised.

        There is an optional argument "input", allowing you to
        pass bytes or a string to the subprocess's stdin.  If you use this argument
        you may not also use the Popen constructor's "stdin" argument, as
        it will be used internally.

        By default, all communication is in bytes, and therefore any "input" should
        be bytes, and the stdout and stderr will be bytes. If in text mode, any
        "input" should be a string, and stdout and stderr will be strings decoded
        according to locale encoding, or by "encoding" if set. Text mode is
        triggered by setting any of text, encoding, errors or universal_newlines.

        The other arguments are the same as for the Popen constructor.
        """
        if input is not None:
            if kwargs.get('stdin') is not None:
                raise ValueError('stdin and input arguments may not both be used.')
            kwargs['stdin'] = PIPE

        if capture_output:
            if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
                raise ValueError('stdout and stderr arguments may not be used '
                                 'with capture_output.')
            kwargs['stdout'] = PIPE
            kwargs['stderr'] = PIPE

        with Popen(*popenargs, **kwargs) as process:
            try:
                stdout, stderr = process.communicate(input, timeout=timeout)
            except TimeoutExpired as exc:
                process.kill()
                if _mswindows:
                    # Windows accumulates the output in a single blocking
                    # read() call run on child threads, with the timeout
                    # being done in a join() on those threads.  communicate()
                    # _after_ kill() is required to collect that and add it
                    # to the exception.
                    exc.stdout, exc.stderr = process.communicate()
                else:
                    # POSIX _communicate already populated the output so
                    # far into the TimeoutExpired exception.
                    process.wait()
                raise
            except:  # Including KeyboardInterrupt, communicate handled that.
                process.kill()
                # We don't call process.wait() as .__exit__ does that for us.
                raise
            retcode = process.poll()
            if check and retcode:
>               raise CalledProcessError(retcode, process.args,
                                         output=stdout, stderr=stderr)
E               subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit status 127.

/usr/lib64/python3.8/subprocess.py:516: CalledProcessError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
/bin/bash: line 1: .venv3.8.13/bin/python: No such file or directory
============================================================================= warnings summary =============================================================================
../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
FAILED tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly - subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit s...
================================================================= 1 failed, 91 passed, 1 warning in 41.35s =================================================================
So issue has bben solved and new one popped out 😋

@kloczek
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Author

kloczek commented Aug 30, 2022

In this case instead sys.executable should be used.

@kloczek
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Author

kloczek commented Aug 30, 2022

Correction: tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly has been failing before as well.

@kloczek
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Author

kloczek commented Nov 14, 2022

Just tested 2.4.0 and looks like test suite is failing now in mypy related units
Here is pytest output:

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.4.0-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.4.0-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra --deselect tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly --ignore tests/test_package_info.py
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.15, pytest-7.1.3, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.4.0
plugins: typeguard-2.13.3
collected 106 items / 1 deselected / 105 selected

tests/test_assert_isinstance.py ...                                                                                                                                  [  2%]
tests/test_base_meta_classes.py .........                                                                                                                            [ 11%]
tests/test_beartype.py ....                                                                                                                                          [ 15%]
tests/test_lib_export.py .                                                                                                                                           [ 16%]
tests/test_mypy.py FFFFFFFFFF.                                                                                                                                       [ 26%]
tests/test_ndarray.py ..........................                                                                                                                     [ 51%]
tests/test_performance.py .                                                                                                                                          [ 52%]
tests/test_pyright.py ..                                                                                                                                             [ 54%]
tests/test_recarray.py ...                                                                                                                                           [ 57%]
tests/test_shape.py ......                                                                                                                                           [ 62%]
tests/test_shape_expression.py ...                                                                                                                                   [ 65%]
tests/test_structure.py ........                                                                                                                                     [ 73%]
tests/test_structure_expression.py .........                                                                                                                         [ 81%]
tests/test_typeguard.py ....                                                                                                                                         [ 85%]
tests/test_wheel.py ..                                                                                                                                               [ 87%]
tests/pandas_/test_dataframe.py .........                                                                                                                            [ 96%]
tests/pandas_/test_fork_sync.py .                                                                                                                                    [ 97%]
tests/pandas_/test_mypy_dataframe.py FFF                                                                                                                             [100%]

================================================================================= FAILURES =================================================================================
_______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_any ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_any>

    def test_mypy_accepts_ndarray_with_any(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            NDArray[Any, Any]
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:17: AssertionError
______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_shape _______________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_shape>

    def test_mypy_accepts_ndarray_with_shape(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, Shape


            NDArray[Shape["3, 3"], Any]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:30: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_structure _____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_structure>

    def test_mypy_accepts_ndarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, RecArray, Structure


            NDArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:43: AssertionError
________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_function_arguments _________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_function_arguments>

    def test_mypy_accepts_ndarrays_as_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func(np.array([1, 2]))  # (Wrong shape though)
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:81: AssertionError
__________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_variable_hints ___________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_variable_hints>

    def test_mypy_accepts_ndarrays_as_variable_hints(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray


            arr: NDArray[Any, Any] = np.array([1, 2, 3])
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:95: AssertionError
________________________________________________________________ MyPyTest.test_mypy_accepts_nptyping_types _________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_nptyping_types>

    def test_mypy_accepts_nptyping_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            import numpy.typing as npt
            from nptyping import (
                NDArray,
                Number,
                Bool,
                Bool8,
                Object,
                Object0,
                Datetime64,
                Integer,
                SignedInteger,
                Int8,
                Int16,
                Int32,
                Int64,
                Byte,
                Short,
                IntC,
                IntP,
                Int0,
                Int,
                LongLong,
                Timedelta64,
                UnsignedInteger,
                UInt8,
                UInt16,
                UInt32,
                UInt64,
                UByte,
                UShort,
                UIntC,
                UIntP,
                UInt0,
                UInt,
                ULongLong,
                Inexact,
                Floating,
                Float16,
                Float32,
                Float64,
                Half,
                Single,
                Double,
                Float,
                LongDouble,
                LongFloat,
                ComplexFloating,
                Complex64,
                Complex128,
                CSingle,
                SingleComplex,
                CDouble,
                Complex,
                CFloat,
                CLongDouble,
                CLongFloat,
                LongComplex,
                Flexible,
                Void,
                Void0,
                Character,
                Bytes,
                String,
                Bytes0,
                Unicode,
                Str0,
            )

            NDArray[Any, Number]
            NDArray[Any, Bool]
            NDArray[Any, Bool8]
            NDArray[Any, Object]
            NDArray[Any, Object0]
            NDArray[Any, Datetime64]
            NDArray[Any, Integer]
            NDArray[Any, SignedInteger]
            NDArray[Any, Int8]
            NDArray[Any, Int16]
            NDArray[Any, Int32]
            NDArray[Any, Int64]
            NDArray[Any, Byte]
            NDArray[Any, Short]
            NDArray[Any, IntC]
            NDArray[Any, IntP]
            NDArray[Any, Int0]
            NDArray[Any, Int]
            NDArray[Any, LongLong]
            NDArray[Any, Timedelta64]
            NDArray[Any, UnsignedInteger]
            NDArray[Any, UInt8]
            NDArray[Any, UInt16]
            NDArray[Any, UInt32]
            NDArray[Any, UInt64]
            NDArray[Any, UByte]
            NDArray[Any, UShort]
            NDArray[Any, UIntC]
            NDArray[Any, UIntP]
            NDArray[Any, UInt0]
            NDArray[Any, UInt]
            NDArray[Any, ULongLong]
            NDArray[Any, Inexact]
            NDArray[Any, Floating]
            NDArray[Any, Float16]
            NDArray[Any, Float32]
            NDArray[Any, Float64]
            NDArray[Any, Half]
            NDArray[Any, Single]
            NDArray[Any, Double]
            NDArray[Any, Float]
            NDArray[Any, LongDouble]
            NDArray[Any, LongFloat]
            NDArray[Any, ComplexFloating]
            NDArray[Any, Complex64]
            NDArray[Any, Complex128]
            NDArray[Any, CSingle]
            NDArray[Any, SingleComplex]
            NDArray[Any, CDouble]
            NDArray[Any, Complex]
            NDArray[Any, CFloat]
            NDArray[Any, CLongDouble]
            NDArray[Any, CLongFloat]
            NDArray[Any, LongComplex]
            NDArray[Any, Flexible]
            NDArray[Any, Void]
            NDArray[Any, Void0]
            NDArray[Any, Character]
            NDArray[Any, Bytes]
            NDArray[Any, String]
            NDArray[Any, Bytes0]
            NDArray[Any, Unicode]
            NDArray[Any, Str0]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:303: AssertionError
__________________________________________________________________ MyPyTest.test_mypy_accepts_numpy_types __________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_numpy_types>

    def test_mypy_accepts_numpy_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray
            import numpy as np


            NDArray[Any, np.dtype[np.int_]]
            NDArray[Any, np.dtype[np.float_]]
            NDArray[Any, np.dtype[np.uint8]]
            NDArray[Any, np.dtype[np.bool_]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:125: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_recarray_with_structure ____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_recarray_with_structure>

    def test_mypy_accepts_recarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import RecArray, Structure


            RecArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:108: AssertionError
___________________________________________________ MyPyTest.test_mypy_disapproves_ndarray_with_wrong_function_arguments ___________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_disapproves_ndarray_with_wrong_function_arguments>

    def test_mypy_disapproves_ndarray_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func("Not an array...")
        """
        )

        self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
        self.assertIn('expected "ndarray[Any, Any]"', stdout)
>       self.assertIn("Found 1 error in 1 file", stdout)
E       AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]\nnptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment\nnptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]\nnptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment\nnptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\nnptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]\nnptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment\nnptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]\nnptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment\n/tmp/tmpa5dvenun/test_file.py:10: error: Argument 1 to "func" has incompatible type "str"; expected "ndarray[Any, Any]"  [arg-type]\nFound 6 errors in 4 files (checked 1 source file)\n'

tests/test_mypy.py:63: AssertionError
_______________________________________________________________ MyPyTest.test_mypy_knows_of_ndarray_methods ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_knows_of_ndarray_methods>

    def test_mypy_knows_of_ndarray_methods(self):
        # If MyPy knows of some arbitrary ndarray methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            arr: NDArray[Any, Any]
            arr.shape
            arr.size
            arr.sort
            arr.squeeze
            arr.transpose
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/test_mypy.py:162: AssertionError
______________________________________________________________ MyPyDataFrameTest.test_mypy_accepts_dataframe _______________________________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_accepts_dataframe>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_accepts_dataframe(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from nptyping import DataFrame, Structure as S
            import pandas as pd


            df: DataFrame[S["x: Int, y: Int"]] = pd.DataFrame({"x": [1], "y": [1]})
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       /tmp/tmpytzgy32r/test_file.py:2: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       /tmp/tmpytzgy32r/test_file.py:2: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 6 errors in 4 files (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:21: AssertionError
_____________________________________________ MyPyDataFrameTest.test_mypy_disapproves_dataframe_with_wrong_function_arguments ______________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_disapproves_dataframe_with_wrong_function_arguments>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_disapproves_dataframe_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import DataFrame, Structure as S


            def func(_: DataFrame[S["x: Float, y: Float"]]) -> None:
                ...


            func("Not an array...")
        """
        )

>       self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
E       AssertionError: 'Argument 1 to "func" has incompatible type "str"' not found in 'nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]\nnptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment\nnptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]\nnptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment\nnptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\nnptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]\nnptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment\nnptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]\nnptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment\nFound 5 errors in 3 files (checked 1 source file)\n'

tests/pandas_/test_mypy_dataframe.py:42: AssertionError
__________________________________________________________ MyPyDataFrameTest.test_mypy_knows_of_dataframe_methods __________________________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_knows_of_dataframe_methods>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_knows_of_dataframe_methods(self):
        # If MyPy knows of some arbitrary DataFrame methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import DataFrame


            df: DataFrame[Any]
            df.shape
            df.dtypes
            df.values
            df.boxplot
            df.filter
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/shape.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/shape.pyi:32: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/shape.pyi:32: note: Error code "valid-type" not covered by "type: ignore" comment
E       nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/structure.pyi:27: error: Incompatible import of "Literal" (imported name has type "typing_extensions._SpecialForm", local name has type "typing._SpecialForm")  [assignment]
E       nptyping/structure.pyi:27: note: Error code "assignment" not covered by "type: ignore" comment
E       nptyping/structure.pyi:34: error: Literal[...] must have at least one parameter  [valid-type]
E       nptyping/structure.pyi:34: note: Error code "valid-type" not covered by "type: ignore" comment
E       Found 5 errors in 3 files (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:67: AssertionError
============================================================================= warnings summary =============================================================================
../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_any - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (import...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_shape - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (impo...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_structure - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_function_arguments - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Li...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_variable_hints - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Litera...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_nptyping_types - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_numpy_types - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (imported na...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_recarray_with_structure - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" ...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_disapproves_ndarray_with_wrong_function_arguments - AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/shape...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_knows_of_ndarray_methods - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import of "Literal" (import...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_accepts_dataframe - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatible import ...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_disapproves_dataframe_with_wrong_function_arguments - AssertionError: 'Argument 1 to "func" has...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_knows_of_dataframe_methods - AssertionError: 0 != 1 : nptyping/shape.pyi:27: error: Incompatibl...
========================================================= 13 failed, 92 passed, 1 deselected, 1 warning in 50.16s ==========================================================

Here is list of installed modules in build env

Package           Version
----------------- --------------
appdirs           1.4.4
attrs             22.1.0
beartype          0.11.0
Brlapi            0.8.3
build             0.9.0
contourpy         1.0.6
cssselect         1.1.0
cycler            0.11.0
distro            1.8.0
dnspython         2.2.1
extras            1.0.0
fixtures          4.0.0
fluidity-sm       0.2.0
fonttools         4.38.0
gpg               1.17.1-unknown
iniconfig         1.1.1
invoke            1.7.0
kiwisolver        1.4.4
lexicon           2.0.1
libcomps          0.1.19
louis             3.23.0
lxml              4.9.1
matplotlib        3.6.2
mypy              0.990
mypy-extensions   0.4.3
nodeenv           1.7.0
numpy             1.23.1
olefile           0.46
packaging         21.3
pandas            1.4.2
pbr               5.9.0
pep517            0.13.0
Pillow            9.3.0
pip               22.2.2
pluggy            1.0.0
py                1.11.0
PyGObject         3.42.2
pyparsing         3.0.9
pyright           1.1.279
pytest            7.1.3
python-dateutil   2.8.2
pytz              2022.4
PyYAML            6.0
rpm               4.17.0
scour             0.38.2
setuptools        65.5.1
six               1.16.0
testtools         2.5.0
tomli             2.0.1
typeguard         2.13.3
typing_extensions 4.3.0
wheel             0.37.1

@ramonhagenaars
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Owner

Thank you for testing (so quickly)! I will look into this.

@ramonhagenaars
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Owner

I think I may have found the issue. My tests have been running against mypy==0.981 whereas you are using mypy==0.990.

Can you run your tests again with mypy==0.981 just to see if this "resolves" it?

I can silence the mypy issues in a patch release to make it compatible with mypy==0.990.

@kloczek
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Author

kloczek commented Nov 16, 2022

Can you run your tests again with mypy==0.981 just to see if this "resolves" it?

I've already deleted rpm package with older mypy version :/
Sooner or later it will be necessary to move to new mypy version so .. 😋

@ramonhagenaars
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Owner

Alright, fair enough. v2.4.1 is compatible with mypy==0.991 (and also mypy==0.990). Can you check against this release?

@kloczek
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kloczek commented Nov 16, 2022

Tag pattern is has been changed from v<version> to <version>. Mistake or from now now it will be like that?
My auomation don't care about pattern as long as it is fixed 😄

@ramonhagenaars
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Owner

Oops... 😆 here we go: v2.4.1

@kloczek
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Author

kloczek commented Nov 16, 2022

OK 😄
Will back shortly 😋

@kloczek
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kloczek commented Nov 16, 2022

Now popped out some pandas related issues 🤔

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.4.1-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.4.1-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra --ignore tests/test_package_info.py
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.15, pytest-7.1.3, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.4.1
plugins: typeguard-2.13.3
collected 106 items

tests/test_assert_isinstance.py ...                                                                                                                                  [  2%]
tests/test_base_meta_classes.py .........                                                                                                                            [ 11%]
tests/test_beartype.py ....                                                                                                                                          [ 15%]
tests/test_lib_export.py .                                                                                                                                           [ 16%]
tests/test_mypy.py FFFFFFFFFF.                                                                                                                                       [ 26%]
tests/test_ndarray.py ..........................                                                                                                                     [ 50%]
tests/test_performance.py .                                                                                                                                          [ 51%]
tests/test_pyright.py ..                                                                                                                                             [ 53%]
tests/test_recarray.py ...                                                                                                                                           [ 56%]
tests/test_shape.py ......                                                                                                                                           [ 62%]
tests/test_shape_expression.py ...                                                                                                                                   [ 65%]
tests/test_structure.py ........                                                                                                                                     [ 72%]
tests/test_structure_expression.py .........                                                                                                                         [ 81%]
tests/test_typeguard.py ....                                                                                                                                         [ 84%]
tests/test_wheel.py F..                                                                                                                                              [ 87%]
tests/pandas_/test_dataframe.py .........                                                                                                                            [ 96%]
tests/pandas_/test_fork_sync.py .                                                                                                                                    [ 97%]
tests/pandas_/test_mypy_dataframe.py FFF                                                                                                                             [100%]

================================================================================= FAILURES =================================================================================
_______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_any ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_any>

    def test_mypy_accepts_ndarray_with_any(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            NDArray[Any, Any]
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:17: AssertionError
______________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_shape _______________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_shape>

    def test_mypy_accepts_ndarray_with_shape(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, Shape


            NDArray[Shape["3, 3"], Any]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:30: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_ndarray_with_structure _____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_structure>

    def test_mypy_accepts_ndarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, RecArray, Structure


            NDArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:43: AssertionError
________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_function_arguments _________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_function_arguments>

    def test_mypy_accepts_ndarrays_as_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func(np.array([1, 2]))  # (Wrong shape though)
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:81: AssertionError
__________________________________________________________ MyPyTest.test_mypy_accepts_ndarrays_as_variable_hints ___________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_variable_hints>

    def test_mypy_accepts_ndarrays_as_variable_hints(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray


            arr: NDArray[Any, Any] = np.array([1, 2, 3])
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:95: AssertionError
________________________________________________________________ MyPyTest.test_mypy_accepts_nptyping_types _________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_nptyping_types>

    def test_mypy_accepts_nptyping_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            import numpy.typing as npt
            from nptyping import (
                NDArray,
                Number,
                Bool,
                Bool8,
                Object,
                Object0,
                Datetime64,
                Integer,
                SignedInteger,
                Int8,
                Int16,
                Int32,
                Int64,
                Byte,
                Short,
                IntC,
                IntP,
                Int0,
                Int,
                LongLong,
                Timedelta64,
                UnsignedInteger,
                UInt8,
                UInt16,
                UInt32,
                UInt64,
                UByte,
                UShort,
                UIntC,
                UIntP,
                UInt0,
                UInt,
                ULongLong,
                Inexact,
                Floating,
                Float16,
                Float32,
                Float64,
                Half,
                Single,
                Double,
                Float,
                LongDouble,
                LongFloat,
                ComplexFloating,
                Complex64,
                Complex128,
                CSingle,
                SingleComplex,
                CDouble,
                Complex,
                CFloat,
                CLongDouble,
                CLongFloat,
                LongComplex,
                Flexible,
                Void,
                Void0,
                Character,
                Bytes,
                String,
                Bytes0,
                Unicode,
                Str0,
            )

            NDArray[Any, Number]
            NDArray[Any, Bool]
            NDArray[Any, Bool8]
            NDArray[Any, Object]
            NDArray[Any, Object0]
            NDArray[Any, Datetime64]
            NDArray[Any, Integer]
            NDArray[Any, SignedInteger]
            NDArray[Any, Int8]
            NDArray[Any, Int16]
            NDArray[Any, Int32]
            NDArray[Any, Int64]
            NDArray[Any, Byte]
            NDArray[Any, Short]
            NDArray[Any, IntC]
            NDArray[Any, IntP]
            NDArray[Any, Int0]
            NDArray[Any, Int]
            NDArray[Any, LongLong]
            NDArray[Any, Timedelta64]
            NDArray[Any, UnsignedInteger]
            NDArray[Any, UInt8]
            NDArray[Any, UInt16]
            NDArray[Any, UInt32]
            NDArray[Any, UInt64]
            NDArray[Any, UByte]
            NDArray[Any, UShort]
            NDArray[Any, UIntC]
            NDArray[Any, UIntP]
            NDArray[Any, UInt0]
            NDArray[Any, UInt]
            NDArray[Any, ULongLong]
            NDArray[Any, Inexact]
            NDArray[Any, Floating]
            NDArray[Any, Float16]
            NDArray[Any, Float32]
            NDArray[Any, Float64]
            NDArray[Any, Half]
            NDArray[Any, Single]
            NDArray[Any, Double]
            NDArray[Any, Float]
            NDArray[Any, LongDouble]
            NDArray[Any, LongFloat]
            NDArray[Any, ComplexFloating]
            NDArray[Any, Complex64]
            NDArray[Any, Complex128]
            NDArray[Any, CSingle]
            NDArray[Any, SingleComplex]
            NDArray[Any, CDouble]
            NDArray[Any, Complex]
            NDArray[Any, CFloat]
            NDArray[Any, CLongDouble]
            NDArray[Any, CLongFloat]
            NDArray[Any, LongComplex]
            NDArray[Any, Flexible]
            NDArray[Any, Void]
            NDArray[Any, Void0]
            NDArray[Any, Character]
            NDArray[Any, Bytes]
            NDArray[Any, String]
            NDArray[Any, Bytes0]
            NDArray[Any, Unicode]
            NDArray[Any, Str0]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:303: AssertionError
__________________________________________________________________ MyPyTest.test_mypy_accepts_numpy_types __________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_numpy_types>

    def test_mypy_accepts_numpy_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray
            import numpy as np


            NDArray[Any, np.dtype[np.int_]]
            NDArray[Any, np.dtype[np.float_]]
            NDArray[Any, np.dtype[np.uint8]]
            NDArray[Any, np.dtype[np.bool_]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:125: AssertionError
____________________________________________________________ MyPyTest.test_mypy_accepts_recarray_with_structure ____________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_recarray_with_structure>

    def test_mypy_accepts_recarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import RecArray, Structure


            RecArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:108: AssertionError
___________________________________________________ MyPyTest.test_mypy_disapproves_ndarray_with_wrong_function_arguments ___________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_disapproves_ndarray_with_wrong_function_arguments>

    def test_mypy_disapproves_ndarray_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func("Not an array...")
        """
        )

        self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
        self.assertIn('expected "ndarray[Any, Any]"', stdout)
>       self.assertIn("Found 1 error in 1 file", stdout)
E       AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\n/tmp/tmp2vh8d6jj/test_file.py:10: error: Argument 1 to "func" has incompatible type "str"; expected "ndarray[Any, Any]"  [arg-type]\nFound 2 errors in 2 files (checked 1 source file)\n'

tests/test_mypy.py:63: AssertionError
_______________________________________________________________ MyPyTest.test_mypy_knows_of_ndarray_methods ________________________________________________________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_knows_of_ndarray_methods>

    def test_mypy_knows_of_ndarray_methods(self):
        # If MyPy knows of some arbitrary ndarray methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            arr: NDArray[Any, Any]
            arr.shape
            arr.size
            arr.sort
            arr.squeeze
            arr.transpose
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/test_mypy.py:162: AssertionError
_________________________________________________________________ WheelTest.test_wheel_is_built_correctly __________________________________________________________________

self = <tests.test_wheel.WheelTest testMethod=test_wheel_is_built_correctly>

    def test_wheel_is_built_correctly(self):
        with working_dir(_ROOT):
>           subprocess.check_output(f"{sys.executable} -m invoke wheel", shell=True)

tests/test_wheel.py:91:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib64/python3.8/subprocess.py:415: in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

input = None, capture_output = False, timeout = None, check = True, popenargs = ('/usr/bin/python3 -m invoke wheel',), kwargs = {'shell': True, 'stdout': -1}
process = <subprocess.Popen object at 0x7f1b69da77f0>, stdout = b'Installing dependencies into: .venv3.8.15\n', stderr = None, retcode = 127

    def run(*popenargs,
            input=None, capture_output=False, timeout=None, check=False, **kwargs):
        """Run command with arguments and return a CompletedProcess instance.

        The returned instance will have attributes args, returncode, stdout and
        stderr. By default, stdout and stderr are not captured, and those attributes
        will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them.

        If check is True and the exit code was non-zero, it raises a
        CalledProcessError. The CalledProcessError object will have the return code
        in the returncode attribute, and output & stderr attributes if those streams
        were captured.

        If timeout is given, and the process takes too long, a TimeoutExpired
        exception will be raised.

        There is an optional argument "input", allowing you to
        pass bytes or a string to the subprocess's stdin.  If you use this argument
        you may not also use the Popen constructor's "stdin" argument, as
        it will be used internally.

        By default, all communication is in bytes, and therefore any "input" should
        be bytes, and the stdout and stderr will be bytes. If in text mode, any
        "input" should be a string, and stdout and stderr will be strings decoded
        according to locale encoding, or by "encoding" if set. Text mode is
        triggered by setting any of text, encoding, errors or universal_newlines.

        The other arguments are the same as for the Popen constructor.
        """
        if input is not None:
            if kwargs.get('stdin') is not None:
                raise ValueError('stdin and input arguments may not both be used.')
            kwargs['stdin'] = PIPE

        if capture_output:
            if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None:
                raise ValueError('stdout and stderr arguments may not be used '
                                 'with capture_output.')
            kwargs['stdout'] = PIPE
            kwargs['stderr'] = PIPE

        with Popen(*popenargs, **kwargs) as process:
            try:
                stdout, stderr = process.communicate(input, timeout=timeout)
            except TimeoutExpired as exc:
                process.kill()
                if _mswindows:
                    # Windows accumulates the output in a single blocking
                    # read() call run on child threads, with the timeout
                    # being done in a join() on those threads.  communicate()
                    # _after_ kill() is required to collect that and add it
                    # to the exception.
                    exc.stdout, exc.stderr = process.communicate()
                else:
                    # POSIX _communicate already populated the output so
                    # far into the TimeoutExpired exception.
                    process.wait()
                raise
            except:  # Including KeyboardInterrupt, communicate handled that.
                process.kill()
                # We don't call process.wait() as .__exit__ does that for us.
                raise
            retcode = process.poll()
            if check and retcode:
>               raise CalledProcessError(retcode, process.args,
                                         output=stdout, stderr=stderr)
E               subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit status 127.

/usr/lib64/python3.8/subprocess.py:516: CalledProcessError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
/bin/bash: line 1: .venv3.8.15/bin/python: No such file or directory
______________________________________________________________ MyPyDataFrameTest.test_mypy_accepts_dataframe _______________________________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_accepts_dataframe>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_accepts_dataframe(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from nptyping import DataFrame, Structure as S
            import pandas as pd


            df: DataFrame[S["x: Int, y: Int"]] = pd.DataFrame({"x": [1], "y": [1]})
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       /tmp/tmp7mbbxlv_/test_file.py:2: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       /tmp/tmp7mbbxlv_/test_file.py:2: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 2 errors in 2 files (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:21: AssertionError
_____________________________________________ MyPyDataFrameTest.test_mypy_disapproves_dataframe_with_wrong_function_arguments ______________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_disapproves_dataframe_with_wrong_function_arguments>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_disapproves_dataframe_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import DataFrame, Structure as S


            def func(_: DataFrame[S["x: Float, y: Float"]]) -> None:
                ...


            func("Not an array...")
        """
        )

>       self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
E       AssertionError: 'Argument 1 to "func" has incompatible type "str"' not found in 'nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\nFound 1 error in 1 file (checked 1 source file)\n'

tests/pandas_/test_mypy_dataframe.py:42: AssertionError
__________________________________________________________ MyPyDataFrameTest.test_mypy_knows_of_dataframe_methods __________________________________________________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_knows_of_dataframe_methods>

    @skipUnless(
        7 < sys.version_info.minor < 11, "MyPy does not work with DataFrame on 3.7"
    )
    def test_mypy_knows_of_dataframe_methods(self):
        # If MyPy knows of some arbitrary DataFrame methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import DataFrame


            df: DataFrame[Any]
            df.shape
            df.dtypes
            df.values
            df.boxplot
            df.filter
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 1 error in 1 file (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:67: AssertionError
============================================================================= warnings summary =============================================================================
../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================= short test summary info ==========================================================================
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_any - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas":...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_shape - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_structure - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pa...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_function_arguments - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analy...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_variable_hints - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_nptyping_types - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": m...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_numpy_types - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": modu...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_recarray_with_structure - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "p...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_disapproves_ndarray_with_wrong_function_arguments - AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/panda...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_knows_of_ndarray_methods - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas":...
FAILED tests/test_wheel.py::WheelTest::test_wheel_is_built_correctly - subprocess.CalledProcessError: Command '/usr/bin/python3 -m invoke wheel' returned non-zero exit s...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_accepts_dataframe - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_disapproves_dataframe_with_wrong_function_arguments - AssertionError: 'Argument 1 to "func" has...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_knows_of_dataframe_methods - AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error:...
================================================================ 14 failed, 92 passed, 1 warning in 47.78s =================================================================
[tkloczko@devel-g2v SPECS]$ pip show pandas
Name: pandas
Version: 1.4.2
Summary: Powerful data structures for data analysis, time series, and statistics
Home-page: https://pandas.pydata.org
Author: The Pandas Development Team
Author-email: [email protected]
License: BSD-3-Clause
Location: /usr/lib64/python3.8/site-packages
Requires: numpy, python-dateutil, pytz
Required-by:

@ramonhagenaars
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Owner

It seems that pandas-stubs-fork is missing. Did you install the extra dependencies for pandas? Normally, one of the following commands would work:
pip install nptyping[pandas] or
pip install nptyping[complete] or
pip install nptyping[dev]

What install command did you use?

@kloczek
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Author

kloczek commented Nov 16, 2022

I'm installing all modules using rpm packages. As I wrote on the begginig I'm packaging all stuff as rpm packages which have python modules dependencies as rpm metadata.

In dependencies/pandas-requirements.txt I see:

pandas
pandas-stubs-fork ; python_version>="3.8"

Does it mean that this pandas-stubs-fork is necessary only with python 3.8.x? (which I'm using now)
If yes we can ignore for now that part for now because I'm going to move all my python modules to python 3.9.x (only to develop general approach of the migration to new python major version) and than to 3.10.x and after that to 3.11.x.
In other words bringing all that to working state on top of python 3.8 is not worth your or mine time.

@ramonhagenaars
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Owner

It means that for any Python version greater than or equal to 3.8, pandas-stubs-fork should be installed if hints for pandas are to be available. That includes 3.10.x and 3.11.x.

@rhurlin
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rhurlin commented Feb 4, 2023

Hi @ramonhagenaars,

Is there a reason you are using your own fork https://pypi.org/project/pandas-stubs-fork/ instead of the one on PyPi derived directly from https://github.com/pandas-dev/pandas-stubs as https://pypi.org/project/pandas-stubs/? The latter is on the same level with the GitHub repo.

I need the pandas stubs for your project nptyping on FreeBSD ;)

A short explanation would be nice, thanks.

@ramonhagenaars
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Owner

Hi @rhurlin ,

The reason is that the DataFrame type of the regular pandas-stubs does not take generics. I opened up an issue at the original project, but I didn't want to wait with the DataFrame support. Hopefully, eventually, I can drop this fork and use the original.

@rhurlin
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rhurlin commented Feb 13, 2023

Hi @ramonhagenaars,
hanks for the explanation.

Since I want to port your project nptyping to FreeBSD, and for that I need to port the original repo pandas-stubs as well if possible, I will probably wait a bit with that.

@kloczek
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kloczek commented Feb 21, 2023

Just tested 2.5.0 and some units still are failing

+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.5.0-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-nptyping-2.5.0-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra -m 'not network' --ignore tests/test_package_info.py
============================= test session starts ==============================
platform linux -- Python 3.8.16, pytest-7.2.1, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0
plugins: typeguard-2.13.3
collected 110 items

tests/test_assert_isinstance.py ...                                      [  2%]
tests/test_base_meta_classes.py .........                                [ 10%]
tests/test_beartype.py ....                                              [ 14%]
tests/test_help_texts.py ...                                             [ 17%]
tests/test_lib_export.py .                                               [ 18%]
tests/test_mypy.py FFFFFFFFFF.                                           [ 28%]
tests/test_ndarray.py ..........................                         [ 51%]
tests/test_performance.py .                                              [ 52%]
tests/test_pyright.py ..                                                 [ 54%]
tests/test_recarray.py ...                                               [ 57%]
tests/test_shape.py ......                                               [ 62%]
tests/test_shape_expression.py ...                                       [ 65%]
tests/test_structure.py ........                                         [ 72%]
tests/test_structure_expression.py ..........                            [ 81%]
tests/test_typeguard.py ....                                             [ 85%]
tests/test_wheel.py sss                                                  [ 88%]
tests/pandas_/test_dataframe.py .........                                [ 96%]
tests/pandas_/test_fork_sync.py .                                        [ 97%]
tests/pandas_/test_mypy_dataframe.py FFF                                 [100%]

=================================== FAILURES ===================================
_________________ MyPyTest.test_mypy_accepts_ndarray_with_any __________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_any>

    def test_mypy_accepts_ndarray_with_any(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            NDArray[Any, Any]
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:17: AssertionError
________________ MyPyTest.test_mypy_accepts_ndarray_with_shape _________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_shape>

    def test_mypy_accepts_ndarray_with_shape(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, Shape


            NDArray[Shape["3, 3"], Any]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:30: AssertionError
______________ MyPyTest.test_mypy_accepts_ndarray_with_structure _______________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarray_with_structure>

    def test_mypy_accepts_ndarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray, RecArray, Structure


            NDArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:43: AssertionError
__________ MyPyTest.test_mypy_accepts_ndarrays_as_function_arguments ___________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_function_arguments>

    def test_mypy_accepts_ndarrays_as_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func(np.array([1, 2]))  # (Wrong shape though)
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:81: AssertionError
____________ MyPyTest.test_mypy_accepts_ndarrays_as_variable_hints _____________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_ndarrays_as_variable_hints>

    def test_mypy_accepts_ndarrays_as_variable_hints(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray


            arr: NDArray[Any, Any] = np.array([1, 2, 3])
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:95: AssertionError
__________________ MyPyTest.test_mypy_accepts_nptyping_types ___________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_nptyping_types>

    def test_mypy_accepts_nptyping_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            import numpy.typing as npt
            from nptyping import (
                NDArray,
                Number,
                Bool,
                Bool8,
                Object,
                Object0,
                Datetime64,
                Integer,
                SignedInteger,
                Int8,
                Int16,
                Int32,
                Int64,
                Byte,
                Short,
                IntC,
                IntP,
                Int0,
                Int,
                LongLong,
                Timedelta64,
                UnsignedInteger,
                UInt8,
                UInt16,
                UInt32,
                UInt64,
                UByte,
                UShort,
                UIntC,
                UIntP,
                UInt0,
                UInt,
                ULongLong,
                Inexact,
                Floating,
                Float16,
                Float32,
                Float64,
                Half,
                Single,
                Double,
                Float,
                LongDouble,
                LongFloat,
                ComplexFloating,
                Complex64,
                Complex128,
                CSingle,
                SingleComplex,
                CDouble,
                Complex,
                CFloat,
                CLongDouble,
                CLongFloat,
                LongComplex,
                Flexible,
                Void,
                Void0,
                Character,
                Bytes,
                String,
                Bytes0,
                Unicode,
                Str0,
            )

            NDArray[Any, Number]
            NDArray[Any, Bool]
            NDArray[Any, Bool8]
            NDArray[Any, Object]
            NDArray[Any, Object0]
            NDArray[Any, Datetime64]
            NDArray[Any, Integer]
            NDArray[Any, SignedInteger]
            NDArray[Any, Int8]
            NDArray[Any, Int16]
            NDArray[Any, Int32]
            NDArray[Any, Int64]
            NDArray[Any, Byte]
            NDArray[Any, Short]
            NDArray[Any, IntC]
            NDArray[Any, IntP]
            NDArray[Any, Int0]
            NDArray[Any, Int]
            NDArray[Any, LongLong]
            NDArray[Any, Timedelta64]
            NDArray[Any, UnsignedInteger]
            NDArray[Any, UInt8]
            NDArray[Any, UInt16]
            NDArray[Any, UInt32]
            NDArray[Any, UInt64]
            NDArray[Any, UByte]
            NDArray[Any, UShort]
            NDArray[Any, UIntC]
            NDArray[Any, UIntP]
            NDArray[Any, UInt0]
            NDArray[Any, UInt]
            NDArray[Any, ULongLong]
            NDArray[Any, Inexact]
            NDArray[Any, Floating]
            NDArray[Any, Float16]
            NDArray[Any, Float32]
            NDArray[Any, Float64]
            NDArray[Any, Half]
            NDArray[Any, Single]
            NDArray[Any, Double]
            NDArray[Any, Float]
            NDArray[Any, LongDouble]
            NDArray[Any, LongFloat]
            NDArray[Any, ComplexFloating]
            NDArray[Any, Complex64]
            NDArray[Any, Complex128]
            NDArray[Any, CSingle]
            NDArray[Any, SingleComplex]
            NDArray[Any, CDouble]
            NDArray[Any, Complex]
            NDArray[Any, CFloat]
            NDArray[Any, CLongDouble]
            NDArray[Any, CLongFloat]
            NDArray[Any, LongComplex]
            NDArray[Any, Flexible]
            NDArray[Any, Void]
            NDArray[Any, Void0]
            NDArray[Any, Character]
            NDArray[Any, Bytes]
            NDArray[Any, String]
            NDArray[Any, Bytes0]
            NDArray[Any, Unicode]
            NDArray[Any, Str0]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:303: AssertionError
____________________ MyPyTest.test_mypy_accepts_numpy_types ____________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_numpy_types>

    def test_mypy_accepts_numpy_types(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray
            import numpy as np


            NDArray[Any, np.dtype[np.int_]]
            NDArray[Any, np.dtype[np.float_]]
            NDArray[Any, np.dtype[np.uint8]]
            NDArray[Any, np.dtype[np.bool_]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:125: AssertionError
______________ MyPyTest.test_mypy_accepts_recarray_with_structure ______________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_accepts_recarray_with_structure>

    def test_mypy_accepts_recarray_with_structure(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import RecArray, Structure


            RecArray[Any, Structure["x: Float, y: Int"]]
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:108: AssertionError
_____ MyPyTest.test_mypy_disapproves_ndarray_with_wrong_function_arguments _____

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_disapproves_ndarray_with_wrong_function_arguments>

    def test_mypy_disapproves_ndarray_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import NDArray, Shape


            def func(_: NDArray[Shape["2, 2"], Any]) -> None:
                ...


            func("Not an array...")
        """
        )

        self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
        self.assertIn('expected "ndarray[Any, Any]"', stdout)
>       self.assertIn("Found 1 error in 1 file", stdout)
E       AssertionError: 'Found 1 error in 1 file' not found in 'nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\nnptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]\nnptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]\nnptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]\nnptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]\nnptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]\nnptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]\nnptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]\n/tmp/tmpmkcmhfrc/test_file.py:10: error: Argument 1 to "func" has incompatible type "str"; expected "ndarray[Any, Any]"  [arg-type]\nFound 9 errors in 3 files (checked 1 source file)\n'

tests/test_mypy.py:63: AssertionError
_________________ MyPyTest.test_mypy_knows_of_ndarray_methods __________________

self = <tests.test_mypy.MyPyTest testMethod=test_mypy_knows_of_ndarray_methods>

    def test_mypy_knows_of_ndarray_methods(self):
        # If MyPy knows of some arbitrary ndarray methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import NDArray


            arr: NDArray[Any, Any]
            arr.shape
            arr.size
            arr.sort
            arr.squeeze
            arr.transpose
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/test_mypy.py:162: AssertionError
________________ MyPyDataFrameTest.test_mypy_accepts_dataframe _________________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_accepts_dataframe>

    @skipUnless(7 < sys.version_info.minor, "MyPy does not work with DataFrame on 3.7")
    def test_mypy_accepts_dataframe(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from nptyping import DataFrame, Structure as S
            import pandas as pd


            df: DataFrame[S["x: Int, y: Int"]] = pd.DataFrame({"x": [1], "y": [1]})
        """
        )
>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       /tmp/tmpqh0y2okt/test_file.py:2: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       /tmp/tmpqh0y2okt/test_file.py:2: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       Found 9 errors in 3 files (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:19: AssertionError
_ MyPyDataFrameTest.test_mypy_disapproves_dataframe_with_wrong_function_arguments _

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_disapproves_dataframe_with_wrong_function_arguments>

    @skipUnless(7 < sys.version_info.minor, "MyPy does not work with DataFrame on 3.7")
    def test_mypy_disapproves_dataframe_with_wrong_function_arguments(self):
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            import numpy as np
            from nptyping import DataFrame, Structure as S


            def func(_: DataFrame[S["x: Float, y: Float"]]) -> None:
                ...


            func("Not an array...")
        """
        )

>       self.assertIn('Argument 1 to "func" has incompatible type "str"', stdout)
E       AssertionError: 'Argument 1 to "func" has incompatible type "str"' not found in 'nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]\nnptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports\nnptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]\nnptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]\nnptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]\nnptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]\nnptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]\nnptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]\nnptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]\nFound 8 errors in 2 files (checked 1 source file)\n'

tests/pandas_/test_mypy_dataframe.py:38: AssertionError
____________ MyPyDataFrameTest.test_mypy_knows_of_dataframe_methods ____________

self = <tests.pandas_.test_mypy_dataframe.MyPyDataFrameTest testMethod=test_mypy_knows_of_dataframe_methods>

    @skipUnless(7 < sys.version_info.minor, "MyPy does not work with DataFrame on 3.7")
    def test_mypy_knows_of_dataframe_methods(self):
        # If MyPy knows of some arbitrary DataFrame methods, we can assume that
        # code completion works.
        exit_code, stdout, stderr = check_mypy_on_code(
            """
            from typing import Any
            from nptyping import DataFrame


            df: DataFrame[Any]
            df.shape
            df.dtypes
            df.values
            df.boxplot
            df.filter
        """
        )

>       self.assertEqual(0, exit_code, stdout)
E       AssertionError: 0 != 1 : nptyping/pandas_/dataframe.pyi:25: error: Skipping analyzing "pandas": module is installed, but missing library stubs or py.typed marker  [import]
E       nptyping/pandas_/dataframe.pyi:25: note: See https://mypy.readthedocs.io/en/stable/running_mypy.html#missing-imports
E       nptyping/typing_.pyi:50: error: Name "np.bool8" is not defined  [name-defined]
E       nptyping/typing_.pyi:52: error: Name "np.object0" is not defined  [name-defined]
E       nptyping/typing_.pyi:64: error: Name "np.int0" is not defined  [name-defined]
E       nptyping/typing_.pyi:77: error: Name "np.uint0" is not defined  [name-defined]
E       nptyping/typing_.pyi:104: error: Name "np.void0" is not defined  [name-defined]
E       nptyping/typing_.pyi:109: error: Name "np.bytes0" is not defined  [name-defined]
E       nptyping/typing_.pyi:111: error: Name "np.str0" is not defined  [name-defined]
E       Found 8 errors in 2 files (checked 1 source file)

tests/pandas_/test_mypy_dataframe.py:61: AssertionError
=============================== warnings summary ===============================
nptyping/typing_.py:51
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:51: DeprecationWarning: `np.bool8` is a deprecated alias for `np.bool_`.  (Deprecated NumPy 1.24)
    Bool8 = np.bool8

nptyping/typing_.py:54
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:54: DeprecationWarning: `np.object0` is a deprecated alias for ``np.object0` is a deprecated alias for `np.object_`. `object` can be used instead.  (Deprecated NumPy 1.24)`.  (Deprecated NumPy 1.24)
    Object0 = np.object0

nptyping/typing_.py:66
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:66: DeprecationWarning: `np.int0` is a deprecated alias for `np.intp`.  (Deprecated NumPy 1.24)
    Int0 = np.int0

nptyping/typing_.py:80
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:80: DeprecationWarning: `np.uint0` is a deprecated alias for `np.uintp`.  (Deprecated NumPy 1.24)
    UInt0 = np.uint0

nptyping/typing_.py:107
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:107: DeprecationWarning: `np.void0` is a deprecated alias for `np.void`.  (Deprecated NumPy 1.24)
    Void0 = np.void0

nptyping/typing_.py:112
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:112: DeprecationWarning: `np.bytes0` is a deprecated alias for `np.bytes_`.  (Deprecated NumPy 1.24)
    Bytes0 = np.bytes0

nptyping/typing_.py:114
  /home/tkloczko/rpmbuild/BUILD/nptyping-2.5.0/nptyping/typing_.py:114: DeprecationWarning: `np.str0` is a deprecated alias for `np.str_`.  (Deprecated NumPy 1.24)
    Str0 = np.str0

../../../../../usr/lib64/python3.8/unittest/loader.py:66
  /usr/lib64/python3.8/unittest/loader.py:66: PytestCollectionWarning: cannot collect test class 'TestLoader' because it has a __init__ constructor (from: tests/test_wheel.py)
    class TestLoader(object):

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
SKIPPED [1] tests/test_wheel.py:91: Does not work on 3.11 due to invoke
SKIPPED [1] tests/test_wheel.py:109: Does not work on 3.11 due to invoke
SKIPPED [1] tests/test_wheel.py:124: Does not work on 3.11 due to invoke
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_any - Ass...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_shape - A...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarray_with_structure
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_function_arguments
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_ndarrays_as_variable_hints
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_nptyping_types - Asser...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_numpy_types - Assertio...
FAILED tests/test_mypy.py::MyPyTest::test_mypy_accepts_recarray_with_structure
FAILED tests/test_mypy.py::MyPyTest::test_mypy_disapproves_ndarray_with_wrong_function_arguments
FAILED tests/test_mypy.py::MyPyTest::test_mypy_knows_of_ndarray_methods - Ass...
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_accepts_dataframe
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_disapproves_dataframe_with_wrong_function_arguments
FAILED tests/pandas_/test_mypy_dataframe.py::MyPyDataFrameTest::test_mypy_knows_of_dataframe_methods
======= 13 failed, 94 passed, 3 skipped, 8 warnings in 62.90s (0:01:02) ========

@kloczek
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kloczek commented Mar 15, 2023

gentle ping .. ay update? 🤔

@mgorny
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mgorny commented Aug 20, 2023

@kloczek, not sure if you need it directly but in Gentoo we only needed it for tests in sphinx-autodoc-typehints. I've just removed the deps and marked nptyping for removal.

@kloczek
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kloczek commented Oct 2, 2023

@kloczek, not sure if you need it directly but in Gentoo we only needed it for tests in sphinx-autodoc-typehints. I've just removed the deps and marked nptyping for removal.

Just checked and .. it is yet another module

[tkloczko@pers-jacek SPECS]$ grep "BuildRequires:.*python3dist(nptyping)" *
python-sphinx-autodoc-typehints.spec:BuildRequires:     python3dist(nptyping)
python-typish.spec:BuildRequires:       python3dist(nptyping)}

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