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Questions on extensions and future development #2

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eric-czech opened this issue Oct 29, 2021 · 2 comments
Open

Questions on extensions and future development #2

eric-czech opened this issue Oct 29, 2021 · 2 comments

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@eric-czech
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Hey @lorinanthony,

We haven't met yet but I believe you spoke to @hammer recently, and we both work on https://github.com/pystatgen/sgkit. I'm very interested in getting some functionality like gene-e up and running in that project. We have a related thread about it at https://github.com/pystatgen/sgkit/issues/692.

If you're up for it, I'd love to get your thoughts on future extensions to gene-e or how you've used it in the past year or so. Have you considered what it would take to support binary phenotypes, rare variants, and/or rare outcomes? More generally, I'd also like to hear what you think of other methods in this space (with a few we know of listed in that thread).

p.s. 🙌 Brown -- don't see that connection too often!

@lorinanthony
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Hey @eric-czech,

As I mentioned to @hammer, more than happy to help with getting gene-e set on sgkit. We are currently working on some of these extensions now. Let me shoot you an email so we can find some time to chat!

@eric-czech
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Sounds good! My email is [email protected].

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