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references.bib
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@article{knuth84,
author = {Knuth, Donald E.},
title = {Literate Programming},
year = {1984},
issue_date = {May 1984},
publisher = {Oxford University Press, Inc.},
address = {USA},
volume = {27},
number = {2},
issn = {0010-4620},
url = {https://doi.org/10.1093/comjnl/27.2.97},
doi = {10.1093/comjnl/27.2.97},
journal = {Comput. J.},
month = may,
pages = {97–111},
numpages = {15}
}
@article{collazo2024,
title = {Rethinking animal attrition in preclinical research: Expressing causal mechanisms of selection bias using directed acyclic graphs},
author = {Collazo, Anja and Kuhn, Hans-Georg and Kurth, Tobias and Piccininni, Marco and Rohmann, Jessica L},
year = {2024},
month = {08},
date = {2024-08-20},
journal = {Journal of Cerebral Blood Flow & Metabolism},
pages = {340--351},
volume = {45},
number = {2},
doi = {10.1177/0271678x241275760},
url = {http://dx.doi.org/10.1177/0271678X241275760},
langid = {en}
}
@article{ggdag,
title = {ggdag: Analyze and Create Elegant Directed Acyclic Graphs},
author = {Barrett, Malcolm},
year = {2024},
date = {2024},
url = {https://CRAN.R-project.org/package=ggdag}
}
@article{flowchart,
title = {flowchart: Tidy Flowchart Generator},
author = {Satorra, Pau and Carmezim, {João} and {Pallarès}, {Natàlia} and {Tebé}, Cristian},
year = {2025},
date = {2025},
url = {https://CRAN.R-project.org/package=flowchart}
}
@article{lederer2019,
title = {Control of Confounding and Reporting of Results in Causal Inference Studies. Guidance for Authors from Editors of Respiratory, Sleep, and Critical Care Journals},
author = {Lederer, David J. and Bell, Scott C. and Branson, Richard D. and Chalmers, James D. and Marshall, Rachel and Maslove, David M. and Ost, David E. and Punjabi, Naresh M. and Schatz, Michael and Smyth, Alan R. and Stewart, Paul W. and Suissa, Samy and Adjei, Alex A. and Akdis, Cezmi A. and Azoulay, {Élie} and Bakker, Jan and Ballas, Zuhair K. and Bardin, Philip G. and Barreiro, Esther and Bellomo, Rinaldo and Bernstein, Jonathan A. and Brusasco, Vito and Buchman, Timothy G. and Chokroverty, Sudhansu and Collop, Nancy A. and Crapo, James D. and Fitzgerald, Dominic A. and Hale, Lauren and Hart, Nicholas and Herth, Felix J. and Iwashyna, Theodore J. and Jenkins, Gisli and Kolb, Martin and Marks, Guy B. and Mazzone, Peter and Moorman, J. Randall and Murphy, Thomas M. and Noah, Terry L. and Reynolds, Paul and Riemann, Dieter and Russell, Richard E. and Sheikh, Aziz and Sotgiu, Giovanni and Swenson, Erik R. and Szczesniak, Rhonda and Szymusiak, Ronald and Teboul, Jean-Louis and Vincent, Jean-Louis},
year = {2019},
month = {01},
date = {2019-01},
journal = {Annals of the American Thoracic Society},
pages = {22--28},
volume = {16},
number = {1},
doi = {10.1513/annalsats.201808-564ps},
url = {http://dx.doi.org/10.1513/AnnalsATS.201808-564PS},
langid = {en}
}
@article{perciedusert2020,
title = {The ARRIVE guidelines 2.0: Updated guidelines for reporting animal research},
author = {Percie du Sert, Nathalie and Hurst, Viki and Ahluwalia, Amrita and Alam, Sabina and Avey, Marc T. and Baker, Monya and Browne, William J. and Clark, Alejandra and Cuthill, Innes C. and Dirnagl, Ulrich and Emerson, Michael and Garner, Paul and Holgate, Stephen T. and Howells, David W. and Karp, Natasha A. and Lazic, Stanley E. and Lidster, Katie and MacCallum, Catriona J. and Macleod, Malcolm and Pearl, Esther J. and Petersen, Ole H. and Rawle, Frances and Reynolds, Penny and Rooney, Kieron and Sena, Emily S. and Silberberg, Shai D. and Steckler, Thomas and {Würbel}, Hanno},
editor = {Boutron, Isabelle},
year = {2020},
month = {07},
date = {2020-07-14},
journal = {PLOS Biology},
pages = {e3000410},
volume = {18},
number = {7},
doi = {10.1371/journal.pbio.3000410},
url = {http://dx.doi.org/10.1371/journal.pbio.3000410},
langid = {en}
}
@misc{lim2021,
title = {XenLoom (beta): Tracking visual-evoked behaviours in Xenopus tadpoles},
author = {Lim, Tony and Ruthazer, Edward},
year = {2021},
month = {03},
date = {2021-03-02},
url = {https://archive.softwareheritage.org/browse/directory/5ebc466dcffd35c58c2e2c720830eaa68980dd62/?origin_url=https://github.com/tonykylim/XenLoom_beta&revision=b487791d1d91a5950eebfd1e7640e0c3db761cf5&snapshot=deb827da14c7221a51286a4c713acea39742b22f}
}
@article{breger2017,
title = {Influence of chronic L-DOPA treatment on immune response following allogeneic and xenogeneic graft in a rat model of Parkinson{\textquoteright}s disease},
author = {Breger, Ludivine S. and Kienle, Korbinian and Smith, Gaynor A. and Dunnett, Stephen B. and Lane, Emma L.},
year = {2017},
month = {03},
date = {2017-03-01},
journal = {Brain, Behavior, and Immunity},
pages = {155--164},
volume = {61},
doi = {10.1016/j.bbi.2016.11.014},
url = {https://www.sciencedirect.com/science/article/pii/S0889159116305165}
}
@article{pwrss,
title = {{\textbraceleft}pwrss{\textbraceright}: Statistical Power and Sample Size Calculation Tools},
author = {Bulus, Metin},
year = {2023},
date = {2023},
url = {https://CRAN.R-project.org/package=pwrss}
}
@article{flextable,
title = {flextable: Functions for Tabular Reporting},
author = {Gohel, David and Skintzos, Panagiotis},
year = {2024},
date = {2024},
url = {https://CRAN.R-project.org/package=flextable}
}
@article{gt,
title = {gt: Easily Create Presentation-Ready Display Tables},
author = {Iannone, Richard and Cheng, Joe and Schloerke, Barret and Hughes, Ellis and Lauer, Alexandra and Seo, JooYoung and Brevoort, Ken and Roy, Olivier},
year = {2024},
date = {2024},
url = {https://CRAN.R-project.org/package=gt}
}
@article{gtable,
title = {gtable: Arrange 'Grobs' in Tables},
author = {Wickham, Hadley and Pedersen, Thomas Lin},
year = {2024},
date = {2024},
url = {https://CRAN.R-project.org/package=gtable}
}
@article{dagitty,
title = {Robust causal inference using directed acyclic graphs: the R package 'dagitty'},
author = {Textor, Johannes and van der Zander, Benito and Gilthorpe, Mark S and {Li\'{\textbraceleft}s{\textbraceright}kiewicz}, Maciej and Ellison, George TH},
year = {2016},
date = {2016},
volume = {45},
doi = {10.1093/ije/dyw341}
}
@article{kattah2017,
title = {Preeclampsia and ESRD: The Role of Shared Risk Factors},
author = {Kattah, Andrea G. and Scantlebury, Dawn C. and Agarwal, Sanket and Mielke, Michelle M. and Rocca, Walter A. and Weaver, Amy L. and Vaughan, Lisa E. and Miller, Virginia M. and Weissgerber, Tracey L. and White, Wendy and Garovic, Vesna D.},
year = {2017},
month = {04},
date = {2017-04},
journal = {American Journal of Kidney Diseases},
pages = {498--505},
volume = {69},
number = {4},
doi = {10.1053/j.ajkd.2016.07.034},
url = {http://dx.doi.org/10.1053/j.ajkd.2016.07.034},
langid = {en}
}