plot_runs

#!/bin/bash

set -e
tempdir=$(mktemp --tmpdir=. -d)
trap 'rm -r "$tempdir"' EXIT
table="${tempdir}/table"
FLAGS=
NORMALISE=false

while getopts ":n:" flag; do
    case "$flag" in
        n) basefile="$OPTARG"; NORMALISE=true ;;
        :) echo "Option -$OPTARG requires argument" >&2 ;;
        \?) echo "Unrecognized option -$OPTARG" >&2 ;;
        *) echo "Unexpected optargs output" >&2 ;;
    esac
done
shift $(($OPTIND - 1))
[ $# -ge 1 ] || { echo "No arguments" >&2; exit; }

tabulate -o "$table" "$@"
remove_pointless "$table" > "${table}.tmp"
mv "${table}.tmp" "$table"

if [ "$NORMALISE" == true ]; then
    FLAGS="$FLAGS -n"
    table_normed="${table}.normed"
    speedup "$basefile" "$table" > "$table_normed"
    table="$table_normed"
fi

cols=$(head -1 "$table")
n=$(wc -w<<<"$cols")

labels=$(cut -f1 "$table" | tail -n+2)
echo $labels
pretty_labels=$(prettify <<<"$labels")
for i in $(seq 1 $n) ; do
    (
    col=$(($i+1))
    col_file="${tempdir}/${col}"
    pretty_file="${col_file}.p"
    cut -f$col "$table" > "$col_file"
    name=$(head -1 "$col_file" | cut -f2)
    pretty_name=$(prettify <<<"$name")
    printf "label\t%s\n" "$pretty_name" > "$pretty_file"
    paste <(echo "$pretty_labels") <(tail -n+2 "$col_file") >> "$pretty_file"
    plot_barchart_tex $FLAGS -t "$pretty_name" "$pretty_file" "$name"
    )&
done
wait