autogen.sh

#!/bin/bash

#First need to build the configure script for jemalloc using autogen
cd libs/jemalloc
bash autogen.sh
cd ../..
CURRENT_DIR=`pwd`
echo Back in $CURRENT_DIR directory

#Rename jemalloc configure.ac file to prevent it from messing with autoconf configuration
if [ -e "./libs/jemalloc/configure.ac" ]
then
echo "Temporarily Renaming jemalloc configure.ac to prevent it from messing with autoconf"
mv ./libs/jemalloc/configure.ac ./libs/jemalloc/configure.ac_tmp
fi

#Run the autotools in order to obtain configure scripts
autoreconf --install

if [ -e "./libs/jemalloc/configure.ac_tmp" ]
then
mv ./libs/jemalloc/configure.ac_tmp ./libs/jemalloc/configure.ac
fi

# Create a man page and html README from the asciidoc using asciidoctor
asciidoctor -b html5 -o README.html README.adoc
asciidoctor -b manpage -d manpage -o igor.1 ./docs/man/igor_manpage.adoc

# Create the Doxygen documentation
doxygen doxygen.config
cd ./docs/latex/
make all
cd ../..
mv ./docs/latex/refman.pdf ./docs/IGoR_CPP_manual.pdf