diff --git a/api/v1/resources/authors.js b/api/v1/resources/authors.js
index 945ddd7..7395960 100644
--- a/api/v1/resources/authors.js
+++ b/api/v1/resources/authors.js
@@ -21,7 +21,13 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.authors,
+ validate: {
+ params: Schema.authors.params,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This route fetches authors starting with the provided letters.'
]
diff --git a/api/v1/resources/families.js b/api/v1/resources/families.js
index a6cde89..9fc1763 100644
--- a/api/v1/resources/families.js
+++ b/api/v1/resources/families.js
@@ -20,7 +20,13 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.families,
+ validate: {
+ params: Schema.families.params,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This route fetches the families starting with the provided letters.'
]
diff --git a/api/v1/resources/files.js b/api/v1/resources/files.js
index ba1d369..f908edd 100644
--- a/api/v1/resources/files.js
+++ b/api/v1/resources/files.js
@@ -42,7 +42,14 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.files,
+ validate: {
+ params: Schema.files.params,
+ query: Schema.files.query,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'Files inside Zenodo records',
]
diff --git a/api/v1/resources/keywords.js b/api/v1/resources/keywords.js
index bcfcf4d..24bc0f8 100644
--- a/api/v1/resources/keywords.js
+++ b/api/v1/resources/keywords.js
@@ -20,7 +20,13 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.keywords,
+ validate: {
+ params: Schema.keywords.params,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This route fetches the keywords starting with the provided letters.'
]
diff --git a/api/v1/resources/record.js b/api/v1/resources/record.js
index b6f402c..32c05ed 100644
--- a/api/v1/resources/record.js
+++ b/api/v1/resources/record.js
@@ -49,7 +49,14 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.record,
+ validate: {
+ params: Schema.record.params,
+ query: Schema.record.query,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This is the main route for fetching a record matching an id or a set of records matching the provided query parameters.'
]
diff --git a/api/v1/resources/records.js b/api/v1/resources/records.js
index 66a1094..27531bd 100644
--- a/api/v1/resources/records.js
+++ b/api/v1/resources/records.js
@@ -250,7 +250,14 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.records,
+ validate: {
+ params: Schema.records.params,
+ query: Schema.records.query,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This is the main route for fetching records matching the provided query parameters.'
]
diff --git a/api/v1/resources/taxa.js b/api/v1/resources/taxa.js
index e117695..b87ffd5 100644
--- a/api/v1/resources/taxa.js
+++ b/api/v1/resources/taxa.js
@@ -20,7 +20,13 @@ module.exports = {
responseMessages: ResponseMessages
}
},
- validate: Schema.authors,
+ validate: {
+ params: Schema.taxa.params,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This route fetches taxa starting with the provided letters.'
]
diff --git a/api/v1/resources/treatment.js b/api/v1/resources/treatment.js
index 1db792a..56dd88e 100644
--- a/api/v1/resources/treatment.js
+++ b/api/v1/resources/treatment.js
@@ -184,7 +184,14 @@ const treatment = {
responseMessages: ResponseMessages
}
},
- validate: Schema.treatments,
+ validate: {
+ params: Schema.treatments.params,
+ query: Schema.treatments.query,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
'This is the main route for fetching a treatment matching an id.'
]
diff --git a/api/v1/schema.js b/api/v1/schema.js
index 0405896..478b4f4 100644
--- a/api/v1/schema.js
+++ b/api/v1/schema.js
@@ -151,6 +151,30 @@ const schema = {
refreshCache: Joi.boolean()
.default(false)
})
+ },
+
+ authors: {
+ params: Joi.object({
+ term: Joi.string().description('retrieve all authors starting with the provided letters (at leeast 3)').required().min(3).message('at least 3 characters are required (for example, « authors/ago »)')
+ })
+ },
+
+ taxa: {
+ params: Joi.object({
+ term: Joi.string().description('retrieve all taxa starting with the provided letters (at leeast 3)').required().min(3).message('at least 3 characters are required (for example, « authors/ago »)')
+ })
+ },
+
+ families: {
+ params: Joi.object({
+ term: Joi.string().description('retrieve all families starting with the provided letters (at leeast 3)').required().min(3).message('at least 3 characters are required (for example, « authors/ago »)')
+ })
+ },
+
+ keywords: {
+ params: Joi.object({
+ term: Joi.string().description('retrieve all keywords starting with the provided letters (at leeast 3)').required().min(3).message('at least 3 characters are required (for example, « authors/ago »)')
+ })
}
};
diff --git a/api/v2/lib/dd2datadictionary.js b/api/v2/lib/dd2datadictionary.js
index 4fc7887..6362b7b 100644
--- a/api/v2/lib/dd2datadictionary.js
+++ b/api/v2/lib/dd2datadictionary.js
@@ -1,68 +1,131 @@
'use strict';
-const { dd, commonParams } = require('../../../dataDictionary/dd');
-
-module.exports = (function() {
+/***********************************************************************
+ *
+ * Here we import the raw data definitions defined in dd.js and the
+ * files included therein, and export a combined and flattened data-
+ * dictionary as well as the resources grouped by resourceGroups to
+ * facilitate fast and convenient lookups.
+ *
+ **********************************************************************/
- const dataDictionary = [];
+const { dd, commonParams } = require('../../../dataDictionary/dd');
+const dd2datadictionary = function() {
+
+ // We will flatten and compile the data dictionary by
+ // converting the following
+ //
+ // dd = {
+ // zenodeoCore: { treatments: [] },
+ // zenodeoRelated: {
+ // figureCitations: [],
+ // bibRefCitations: [],
+ // …
+ // }
+ // }
+ //
+ // to the following
+ //
+ // dataDictionary = {
+ // treatments: [],
+ // figureCitations: [],
+ // bibRefCitations: [],
+ // …
+ // }
+ //
+ // In the process, we will also add the required
+ // common parameters to all the resources
+ const dataDictionary = {};
+
+ // We will also create a bundle of all the resources
+ // grouped by their resource groups, and carrying with
+ // them the name of the 'resource' and the name of the
+ // 'resourceId'. This will look like
+ //
+ // "zenodeoCore": [
+ // {
+ // "name": "treatments",
+ // "resourceId": "treatmentId"
+ // }
+ // ],
+ // "zenodeoRelated": [
+ // {
+ // "name": "figureCitations",
+ // "resourceId": "figureCitationId"
+ // },
+ // {
+ // "name": "bibRefCitations",
+ // "resourceId": "bibRefCitationId"
+ // },
const resourceGroups = {};
+ // loop over each resourceGroup 'rg' in the raw dd
+ // 'rg' will be one of
+ // - zenodeoCore
+ // - zendeoRelated
+ // - zenodo
+ // - lookups
for (let rg in dd) {
- resourceGroups[rg] = [];
- const resources = dd[rg];
-
- for (let r in resources) {
- resources[r].push(...commonParams['all']);
+ resourceGroups[rg] = [];
+
+ // loop over each resource in the respective resource groups
+ const groupResources = dd[rg];
+ for (let resource in groupResources) {
- // this ensures that nothing is added to 'treatments'
- if (commonParams[rg].length) {
- resources[r].push(...commonParams[rg]);
- }
-
-
- //if (rg === 'zenodo') {
-
- // resources[r].push(...commonZenodoQueryParams);
- //}
- //else if (rg === 'zenodeo') {
-
- // if (r !== 'treatments') {
+ // Add the commonParams to 'all' the resources no matter
+ // which resourceGroup they are in (hence, the 'all')
+ let gr = groupResources[resource];
+ gr.push(...commonParams['all']);
+
+ // Don't add any params if a particular resourceGroup's
+ // specific commonParams are empty. This ensures nothing
+ // is added to 'treatments' which is a part of 'zenodeoCore'
+ // and to all the lookups. We do this by testing whether the
+ // commonParams of a 'rg' are empty by checking its .length()
+ if (commonParams[rg].length) {
- // resources[r].push(...commonZenodeoQueryParams);
- // }
- //}
+ // we are using concat() instead of push() because we
+ // want to add these parameters in front of the array
+ // rather than at the end of the array
+ gr = [].concat(commonParams[rg], gr)
+ }
- for (let i = 0, j = resources[r].length; i < j; i++) {
+ // For every resource, we add its name and the name of its
+ // resourceId key to the resourceGroups hash
+ let name = resource;
+ let resourceId = '';
+ for (let i = 0, j = gr.length; i < j; i++) {
- if (rg === 'lookups') {
+ if (rg !== 'lookups') {
- resourceGroups[rg].push({
- name: r,
- resourceId: ''
- });
- break;
- }
- else {
+ if (gr[i].resourceId) {
- if (resources[r][i].resourceId && resources[r][i].resourceId === true) {
+ if (gr[i].resourceId === true) {
- resourceGroups[rg].push({
- name: r,
- resourceId: resources[r][i].plaziName
- });
- break;
+ resourceId = gr[i].plaziName;
+ break;
+ }
}
+
}
}
- dataDictionary.push(...resources[r]);
+ resourceGroups[rg].push({
+ name: name,
+ resourceId: resourceId
+ });
+
+ dataDictionary[resource] = gr;
+
}
+
+
}
return {
@@ -70,4 +133,21 @@ module.exports = (function() {
resourceGroups: resourceGroups
};
-})();
\ No newline at end of file
+};
+
+const test = function() {
+
+ const dd = dd2datadictionary();
+ console.log(JSON.stringify(dd, null, ' '));
+
+};
+
+// https://stackoverflow.com/questions/6398196/detect-if-called-through-require-or-directly-by-command-line?rq=1
+if (require.main === module) {
+
+ test();
+}
+else {
+
+ module.exports = (dd2datadictionary)();
+}
\ No newline at end of file
diff --git a/api/v2/lib/dd2queries.js b/api/v2/lib/dd2queries.js
index ce15596..5951487 100644
--- a/api/v2/lib/dd2queries.js
+++ b/api/v2/lib/dd2queries.js
@@ -1,11 +1,16 @@
'use strict';
+/***********************************************************************
+ *
+ * Here we use the combined and flatened data dictionary to generate all
+ * the SQL queries required to extract data from the db based on the
+ * supplied queryObject
+ *
+ **********************************************************************/
+
const config = require('config');
const plog = require(config.get('plog'));
-// The following params may be present in the querystring but they are
-// not included when making the SQL
-const exclude = ['resources', 'communities', 'facets', 'page', 'size', 'stats', 'xml', 'limit', 'offset', 'refreshCache', 'resources', 'resourceId'];
// We need sort params only for the data query.
// Here we figure out the sortcol and sortdir
@@ -37,28 +42,47 @@ const calcConstraint = function(ddKeys, queryObject) {
}
else {
for (let k in queryObject) {
-
- if (! exclude.includes(k)) {
-
- const ddk = ddKeys.byQueryString[queryObject.resource][k];
- if (ddk) {
- const op = ddk.queryable;
- const sqlName = ddk.sqlName;
-
- if (op === 'equal') {
- constraint.push(`${sqlName} = @${k}`);
- }
- else if (op === 'like') {
- queryObject[k] = queryObject[k] + '%';
- constraint.push(`${sqlName} LIKE @${k}`);
- }
- else if (op === 'match') {
- matchTables.push(ddk.table);
- constraint.push(`${sqlName} MATCH @${k}`);
- }
+
+ const f = ddKeys.byQueryString[queryObject.resource][k];
+
+ if (f) {
+
+ const op = f.queryable;
+ const sqlName = f.sqlName;
+
+ if (op === 'equal') {
+ constraint.push(`${sqlName} = @${k}`);
+ }
+ else if (op === 'like') {
+ queryObject[k] = queryObject[k] + '%';
+ constraint.push(`${sqlName} LIKE @${k}`);
+ }
+ else if (op === 'match') {
+ matchTables.push(f.table);
+ constraint.push(`${sqlName} MATCH @${k}`);
+ }
+ else if (op === 'between') {
+
+ // else if (col === 'lat') {
+ // cols.push('latitude > @min_latitude');
+ // cols.push('latitude < @max_latitude');
+ // queryObject.min_latitude = queryObject.lat - range;
+ // queryObject.max_latitude = +queryObject.lat + range;
+ // }
+ // else if (col === 'lon') {
+ // cols.push('longitude > @min_longitude');
+ // cols.push('longitude < @max_longitude');
+ // queryObject.min_longitude = queryObject.lon - range;
+ // queryObject.max_longitude = +queryObject.lon + range;
+ // }
+
+ const delta = 0.9;
+ queryObject[`min_${k}`] = +queryObject[k] - delta;
+ queryObject[`max_${k}`] = +queryObject[k] + delta;
+ constraint.push(`${sqlName} > @min_${k}`);
+ constraint.push(`${sqlName} < @max_${k}`);
}
}
-
}
}
@@ -129,36 +153,36 @@ const calcQuery = function(ddKeys, queryGroup, query, queryObject, matchTables,
return sql;
};
-const ddKeys = function() {
-
+const getDdKeys = function() {
+
const byQueryString = {};
const byResourceIds = {};
const { dataDictionary, resourceGroups } = require('./dd2datadictionary');
-
+
for (let resource in dataDictionary) {
+ // resource-specific data dictionary
+ const rdd = dataDictionary[resource];
+
byQueryString[resource] = {};
- const resPart = dataDictionary[resource];
- for (let i = 0, j = resPart.length; i < j; i++) {
- const qs = resPart[i].queryString;
+ for (let i = 0, j = rdd.length; i < j; i++) {
+ const f = rdd[i];
+ const qs = f.queryString;
+
if (qs) {
byQueryString[resource][qs] = {
- sqlName: resPart[i].sqlName || qs,
- queryable: resPart[i].queryable,
- table: resPart[i].table || false,
- resourceId: resPart[i].resourceId || false
+ sqlName: f.sqlName || qs,
+ queryable: f.queryable,
+ table: f.table || false,
+ resourceId: f.resourceId ? f.plaziName : false
}
- if (resPart[i].resourceId) {
-
- byResourceIds[resource] = resPart[i].plaziName
- }
-
}
+
}
}
@@ -172,7 +196,7 @@ const ddKeys = function() {
const dd2queries = function(queryObject) {
- plog.info('queryObject', JSON.stringify(queryObject));
+ plog.info('queryObject', queryObject);
// get a reference to the resource-specific query parts.
// For example, if 'queryObject.resource' is 'treatments'
@@ -181,7 +205,9 @@ const dd2queries = function(queryObject) {
const qParts = require('./qparts');
const r = qParts[queryObject.resource];
- const ddKeys = ddKeys();
+ const ddKeys = getDdKeys();
+ plog.info('ddKeys', ddKeys);
+
const pk = ddKeys.byResourceIds[queryObject.resource];
const [ matchTables, constraint ] = calcConstraint(ddKeys, queryObject);
@@ -193,13 +219,17 @@ const dd2queries = function(queryObject) {
// we want to retain the original query parts.
const queries = JSON.parse(JSON.stringify(r.queries));
- const queryGroups = {
- PK: [ 'related', 'taxonStats' ],
- notPK: [ 'facets', 'stats' ]
- };
+ const doGroups = ['essential'];
+
+ if (queryObject[pk]) {
- const doGroups = queryObject[pk] ? queryGroups.PK : queryGroups.notPK;
- doGroups.push('essential');
+ doGroups.push(...[ 'related', 'taxonStats' ]);
+ }
+ else {
+
+ if (queryObject.facets) doGroups.push('facets');
+ if (queryObject.stats) doGroups.push('stats');
+ }
const q = {};
@@ -233,26 +263,39 @@ const dd2queries = function(queryObject) {
return q;
};
-module.exports = dd2queries;
-
-// const so = dd2schema();
-// const q = dd2queries({
-// communities: ['biosyslit', 'belgiumherbarium'],
-// refreshCache: false,
-// page: 1,
-// size: 30,
-// resources: 'treatments',
-// facets: true,
-// stats: true,
-// xml: false,
-// //sortBy: 'journalYear:ASC',
-// q: 'carabus',
-// authorityName: 'Agosti',
-// journalYear: '1996',
-// format: 'xml',
-// treatmentTitle: 'opheys',
-// doi: '10.2454/sdff:1956',
-// treatmentId: '58F12CC7CCAD08F32CF9920D36C9992E'
-// });
-
-// console.log(JSON.stringify(q, null, '\t'))
\ No newline at end of file
+const test = function() {
+
+ const queryObject = {
+ communities: ['biosyslit', 'belgiumherbarium'],
+ refreshCache: false,
+ page: 1,
+ size: 30,
+ resource: 'treatments',
+ facets: false,
+ stats: false,
+ xml: false,
+ sortBy: 'journalYear:ASC',
+ // q: 'carabus',
+ authorityName: 'Agosti',
+ // journalYear: '1996',
+ // format: 'xml',
+ // treatmentTitle: 'opheys',
+ // doi: '10.2454/sdff:1956',
+ // treatmentId: '58F12CC7CCAD08F32CF9920D36C9992E'
+ };
+
+ const q = dd2queries(queryObject);
+ console.log(q);
+
+};
+
+// https://stackoverflow.com/questions/6398196/detect-if-called-through-require-or-directly-by-command-line?rq=1
+if (require.main === module) {
+
+ test();
+}
+else {
+
+ module.exports = dd2queries;
+}
+
diff --git a/api/v2/lib/dd2schema.js b/api/v2/lib/dd2schema.js
index 04cef29..f7a8bdd 100644
--- a/api/v2/lib/dd2schema.js
+++ b/api/v2/lib/dd2schema.js
@@ -1,11 +1,18 @@
'use strict';
+/***********************************************************************
+ *
+ * Here we convert the combined and flattened data-dictionary into a
+ * schema that can be used by Joi for parameter vaidation in the
+ * incoming REST API queries.
+ *
+ **********************************************************************/
+
const Joi = require('@hapi/joi');
const { dataDictionary, resourceGroups } = require('./dd2datadictionary');
const Boom = require('@hapi/boom');
-// 'resources' is the plural form of the desired resource
-// for example, 'treatments' or 'materialsCitations'
+
const dd2schema = function() {
// the schema object we are going to construct
@@ -14,17 +21,16 @@ const dd2schema = function() {
for (let resource in dataDictionary) {
- // resource-specific data dictionary
- const rdd = dataDictionary[resource];
-
// resource-specific schema description
const rso = {};
const rsoLog = {};
+ // resource-specific data dictionary
+ const rdd = dataDictionary[resource];
+
for (let i = 0, j = rdd.length; i < j; i++) {
- const f = rdd[i];
- //const n = f.plaziName;
+ const f = rdd[i];
const qs = f.queryString;
if (qs) {
@@ -49,36 +55,37 @@ const dd2schema = function() {
soLog[resource] = { query: `Joi.object(${JSON.stringify(rsoLog, null, 4)})` };
}
- //plog.info('Schema Object', so);
- return so;
+ return { Schema: so, SchemaLog: soLog };
};
-// const so = dd2schema();
-
-// const { error, value } = so.treatments.query.validate({
-// communities: 'biosyslit',
-// refreshCache: false,
-// page: 1,
-// size: 30,
-// //resources: 'treatments',
-// facets: true,
-// stats: true,
-// xml: false,
-// sortBy: 'journalYear:ASC',
-// q: 'carabus',
-// // authorityName: 'Agosti',
-// // journalYear: '1996',
-// format: 'xml',
-// treatmentTitle: 'opheys',
-// doi: '10.2454/sdff:1956'
-// });
-
-// if (error) {
-// console.log(error);
-// }
-// else {
-// plog.info('passed');
-// }
-
-module.exports = (dd2schema)();
\ No newline at end of file
+const test = function() {
+
+ const { Schema, SchemaLog } = dd2schema();
+ console.log(SchemaLog);
+
+ const { error, value } = Schema.materialsCitations.query.validate({
+ materialsCitationId: '19325B47274DC7B60C78E6AEBFAB8689'
+ });
+
+ if (error) {
+
+ console.log(error);
+ }
+ else {
+
+ console.log('passed');
+ }
+
+};
+
+
+// https://stackoverflow.com/questions/6398196/detect-if-called-through-require-or-directly-by-command-line?rq=1
+if (require.main === module) {
+
+ test();
+}
+else {
+
+ module.exports = (dd2schema)();
+}
\ No newline at end of file
diff --git a/api/v2/lib/routeMaker.js b/api/v2/lib/routeMaker.js
index 605c92c..d86953b 100644
--- a/api/v2/lib/routeMaker.js
+++ b/api/v2/lib/routeMaker.js
@@ -1,12 +1,17 @@
'use strict';
-const Schema = require('./dd2schema');
+const { Schema, SchemaLog } = require('./dd2schema');
const ResponseMessages = require('../../responseMessages');
const Utils = require('../utils');
const h = function(resource) {
- const { handler, getRecords } = require(`../lib/${resource.group}`);
+ const rg = resource.group.startsWith('zenodeo') ? 'zenodeo' : resource.group;
+ const { handler, getRecords } = require(`../lib/${rg}`);
+
+ // Add a '2' to the name for lookups because lookups by the
+ // same names already exist in api/v1, and plugin names
+ // have to be unique
const pluginName = resource.group === 'lookups' ? `${resource.name}2`
: resource.name;
@@ -45,12 +50,17 @@ const h = function(resource) {
responseMessages: ResponseMessages
}
},
- validate: Schema[resource.name],
+ validate: {
+ query: Schema[resource.name].query,
+ failAction: (request, h, err) => {
+ throw err;
+ return;
+ }
+ },
notes: [
`This is the main route for fetching ${resource.name} matching the provided query parameters.`
]
}
-
}]);
},
@@ -59,4 +69,4 @@ const h = function(resource) {
};
-module.exports = h;
\ No newline at end of file
+module.exports = h;
diff --git a/api/v2/lib/zenodeoCore.js b/api/v2/lib/zenodeo.js
similarity index 75%
rename from api/v2/lib/zenodeoCore.js
rename to api/v2/lib/zenodeo.js
index 1fc0ff8..201462c 100644
--- a/api/v2/lib/zenodeoCore.js
+++ b/api/v2/lib/zenodeo.js
@@ -1,12 +1,18 @@
-/**************************************
- * abstracted logic for the handler and other functions
- * for resources that are fetched from Zenodeo
- * - treatments.js
- * - treatmentAuthors.js
- **************************************/
-
'use strict';
+/*******************************************************
+ *
+ * Abstracted logic for the handler and other functions
+ * for the related resources that are fetched from
+ * Zenodeo
+ * - treatmentAuthors
+ * - materialsCitations
+ * - treatmentCitations
+ * - bibRefCitations
+ * - figureCitations
+ *
+ ******************************************************/
+
const config = require('config');
const plog = require(config.get('plog'));
const cacheOn = config.get('v2.cache.on');
@@ -14,9 +20,8 @@ const uriZenodeo = config.get('v2.uri.zenodeo');
const Utils = require('../utils');
const Database = require('better-sqlite3');
const db = new Database(config.get('data.treatments'));
-const dbQueries = new Database(config.get('data.queries'));
-const fs = require('fs');
-
+// const dbQueries = new Database(config.get('data.queries'));
+//console.log('rg')
const dd2queries = require('../lib/dd2queries');
@@ -29,18 +34,14 @@ const handler = function(resource) {
// bunch up messages to print them to the log
const messages = [{label: 'queryObject', params: queryObject}];
- //if (queryObject.resource === 'treatments') {
-
- // if xml is being requested, send it back and be done with it
- if (queryObject.format && queryObject.format === 'xml') {
-
- plog.log({ header: 'WEB QUERY', messages: messages });
- return h.response(getXml(queryObject.treatmentId))
- .type('text/xml')
- .header('Content-Type', 'application/xml');
-
- }
- //}
+ if (queryObject.format && queryObject.format === 'xml') {
+
+ plog.log({ header: 'WEB QUERY', messages: messages });
+ return h.response(getXml(queryObject.treatmentId))
+ .type('text/xml')
+ .header('Content-Type', 'application/xml');
+
+ }
// cacheKey is the URL query without the refreshCache param.
const cacheKey = Utils.makeCacheKey(request);
@@ -106,94 +107,7 @@ const getRecords = function(cacheKey) {
}
};
-// https://stackoverflow.com/a/18234317/183692
-const formatUnicorn = function () {
-
- let str = this.toString().replace(/@(\w+)/g, "'{\$1}'");
-
- if (arguments.length) {
-
- const t = typeof arguments[0];
- const args = ('string' === t || 'number' === t) ?
- Array.prototype.slice.call(arguments)
- : arguments[0];
-
- for (let key in args) {
- str = str.replace(new RegExp("\\{" + key + "\\}", "gi"), args[key]);
- }
- }
-
- return str;
-};
-
-String.prototype.formatUnicorn = String.prototype.formatUnicorn || formatUnicorn;
-
-const dataForDelivery = function(t, data, debug) {
-
- if (cacheOn) {
- return data;
- }
- else {
- const report = { msec: t.msr }
-
- if (process.env.NODE_ENV === 'test') {
- report.debug = debug;
- }
-
- const {queryObject, sqls} = debug;
- const inserts = sqls.length;
-
- const s1 = dbQueries.prepare(`INSERT INTO webqueries (qp) VALUES(@qp) ON CONFLICT(qp) DO UPDATE SET count=count+1`);
-
- const s2 = dbQueries.prepare('SELECT Max(id) AS id FROM webqueries');
-
- const s3 = dbQueries.prepare(`INSERT INTO sqlqueries (sql) VALUES(@sql) ON CONFLICT(sql) DO NOTHING`);
-
- const s4 = dbQueries.prepare('SELECT Max(id) AS id FROM sqlqueries');
-
- const s5 = dbQueries.prepare('INSERT INTO stats (webqueries_id, sqlqueries_id, timeTaken) VALUES (@webqueries_id, @sqlqueries_id, @timeTaken)');
-
- if (inserts) {
-
- try {
- //dbQueries.prepare('BEGIN TRANSACTION').run();
-
- const qp = JSON.stringify(queryObject);
- s1.run({qp: qp});
-
- const webqueries_id = s2.get().id;
-
- for (let i = 0; i < inserts; i++) {
-
- const sql = sqls[i].sql.formatUnicorn(queryObject);
- const t = sqls[i].took;
-
- s3.run({sql: sql});
-
- const sqlqueries_id = s4.get().id;
-
- s5.run({
- webqueries_id: webqueries_id,
- sqlqueries_id: sqlqueries_id,
- timeTaken: t.msr
- });
-
- }
- }
- catch (error) {
- console.log(error);
- }
-
- }
-
- return {
- value: data,
- cached: null,
- report: report
- }
- }
-
-};
+String.prototype.formatUnicorn = String.prototype.formatUnicorn || Utils.formatUnicorn;
const getOneRecord = function(queryObject) {
@@ -258,7 +172,7 @@ const getOneRecord = function(queryObject) {
// We are done if no records found
if (! data['num-of-records']) {
timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
+ return Utils.dataForDelivery(timer, data, debug);
}
// more data from beyond the database
@@ -273,7 +187,7 @@ const getOneRecord = function(queryObject) {
data['related-records'] = getRelatedRecords(q, queryObject, debug);
timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
+ return Utils.dataForDelivery(timer, data, debug);
};
const getManyRecords = async function(queryObject) {
@@ -289,6 +203,7 @@ const getManyRecords = async function(queryObject) {
const q = dd2queries(queryObject);
+
// this is where we will store the various SQL statements
// and their performance metrics so we can store them in a db
const debug = {
@@ -336,7 +251,7 @@ const getManyRecords = async function(queryObject) {
});
timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
+ return Utils.dataForDelivery(timer, data, debug);
}
// get the records
@@ -349,7 +264,7 @@ const getManyRecords = async function(queryObject) {
data.records = db.prepare(dataSql).all(queryObject) || [];
t = process.hrtime(t);
- const p = { sql: countSql, took: Utils.timerFormat(t) };
+ const p = { sql: dataSql, took: Utils.timerFormat(t) };
messages.push({ label: 'data', params: p });
debug.sqls.push(p);
@@ -368,12 +283,16 @@ const getManyRecords = async function(queryObject) {
data.records.forEach(rec => {
+ //console.log(`queryObject.resourceId: ${rec[queryObject.resourceId]}`);
rec._links = {};
rec._links.self = Utils.makeLink({
uri: uriZenodeo,
params: {
- resource: queryObject.resource,
- resourceId: [ queryObject.resourceId, rec[queryObject.resourceId] ]
+ path: queryObject.path,
+ resourceId: {
+ key: queryObject.resourceId,
+ val: rec[queryObject.resourceId]
+ }
}
});
@@ -422,7 +341,7 @@ const getManyRecords = async function(queryObject) {
// all done
timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
+ return Utils.dataForDelivery(timer, data, debug);
};
const getStatsFacets = function(type, q, queryObject, debug) {
diff --git a/api/v2/lib/zenodeoRelated.js b/api/v2/lib/zenodeoRelated.js
deleted file mode 100644
index f229a83..0000000
--- a/api/v2/lib/zenodeoRelated.js
+++ /dev/null
@@ -1,570 +0,0 @@
-/**************************************
- * abstracted logic for the handler and other functions
- * for resources that are fetched from Zenodeo
- * - treatments.js
- * - treatmentAuthors.js
- **************************************/
-
-'use strict';
-
-const config = require('config');
-const plog = require(config.get('plog'));
-const cacheOn = config.get('v2.cache.on');
-const uriZenodeo = config.get('v2.uri.zenodeo');
-const Utils = require('../utils');
-const Database = require('better-sqlite3');
-const db = new Database(config.get('data.treatments'));
-const dbQueries = new Database(config.get('data.queries'));
-const fs = require('fs');
-
-const dd2queries = require('../lib/dd2queries');
-
-
-const handler = function(resource) {
-
- return async function(request, h) {
-
- const queryObject = Utils.modifyIncomingQueryObject(request.query, resource);
-
- // bunch up messages to print them to the log
- const messages = [{label: 'queryObject', params: queryObject}];
-
- // if (queryObject.resource === 'treatments') {
-
- // // if xml is being requested, send it back and be done with it
- // if (queryObject.format && queryObject.format === 'xml') {
-
- // plog.log({ header: 'WEB QUERY', messages: messages });
- // return h.response(getXml(queryObject.treatmentId))
- // .type('text/xml')
- // .header('Content-Type', 'application/xml');
-
- // }
- // }
-
- // cacheKey is the URL query without the refreshCache param.
- const cacheKey = Utils.makeCacheKey(request);
- messages.push({label: 'cacheKey', params: cacheKey});
-
- let result;
- if (cacheOn) {
- if (queryObject.refreshCache || queryObject.refreshCache === 'true') {
-
- messages.push({
- label: 'info',
- params: 'force emptying the cache'
- });
-
- this.cache.drop(cacheKey);
-
- messages.push({
- label: 'info',
- params: 'refilling the cache with fresh results'
- });
-
- }
-
- messages.push({
- label: 'info',
- params: 'getting results from the cache'
- });
-
- plog.log({ header: 'WEB QUERY', messages: messages });
- result = this.cache.get(cacheKey);
- }
- else {
-
- messages.push({
- label: 'info',
- params: 'querying for fresh results'
- });
-
- plog.log({ header: 'WEB QUERY', messages: messages });
- result = getRecords(cacheKey);
-
- }
-
- return result;
-
- };
-
-};
-
-const getRecords = function(cacheKey) {
-
- const queryObject = Utils.makeQueryObject(cacheKey);
-
- // A resourceId is present. The query is for a specific
- // record. All other query params are ignored
- if (queryObject[queryObject.resourceId]) {
- return getOneRecord(queryObject);
- }
-
- // More complicated queries with search parameters
- else {
- return getManyRecords(queryObject)
- }
-};
-
-// https://stackoverflow.com/a/18234317/183692
-const formatUnicorn = function () {
-
- let str = this.toString().replace(/@(\w+)/g, "'{\$1}'");
-
- if (arguments.length) {
-
- const t = typeof arguments[0];
- const args = ('string' === t || 'number' === t) ?
- Array.prototype.slice.call(arguments)
- : arguments[0];
-
- for (let key in args) {
- str = str.replace(new RegExp("\\{" + key + "\\}", "gi"), args[key]);
- }
- }
-
- return str;
-};
-
-String.prototype.formatUnicorn = String.prototype.formatUnicorn || formatUnicorn;
-
-const dataForDelivery = function(t, data, debug) {
-
- if (cacheOn) {
- return data;
- }
- else {
- const report = { msec: t.msr }
-
- if (process.env.NODE_ENV === 'test') {
- report.debug = debug;
- }
-
- const {queryObject, sqls} = debug;
- const inserts = sqls.length;
-
- const s1 = dbQueries.prepare(`INSERT INTO webqueries (qp) VALUES(@qp) ON CONFLICT(qp) DO UPDATE SET count=count+1`);
-
- const s2 = dbQueries.prepare('SELECT Max(id) AS id FROM webqueries');
-
- const s3 = dbQueries.prepare(`INSERT INTO sqlqueries (sql) VALUES(@sql) ON CONFLICT(sql) DO NOTHING`);
-
- const s4 = dbQueries.prepare('SELECT Max(id) AS id FROM sqlqueries');
-
- const s5 = dbQueries.prepare('INSERT INTO stats (webqueries_id, sqlqueries_id, timeTaken) VALUES (@webqueries_id, @sqlqueries_id, @timeTaken)');
-
- if (inserts) {
-
- try {
- //dbQueries.prepare('BEGIN TRANSACTION').run();
-
- const qp = JSON.stringify(queryObject);
- s1.run({qp: qp});
-
- const webqueries_id = s2.get().id;
-
- for (let i = 0; i < inserts; i++) {
-
- const sql = sqls[i].sql.formatUnicorn(queryObject);
- const t = sqls[i].took;
-
- s3.run({sql: sql});
-
- const sqlqueries_id = s4.get().id;
-
- s5.run({
- webqueries_id: webqueries_id,
- sqlqueries_id: sqlqueries_id,
- timeTaken: t.msr
- });
-
- }
- }
- catch (error) {
- console.log(error);
- }
-
- }
-
- return {
- value: data,
- cached: null,
- report: report
- }
- }
-
-};
-
-const getOneRecord = function(queryObject) {
-
- let timer = process.hrtime();
-
- const messages = [ {label: 'queryObject', params: queryObject} ];
-
- // data will hold all the query results to be sent back
- const data = {
- 'search-criteria': Utils.makeSearchCriteria(queryObject)
- };
-
- const q = dd2queries(queryObject);
-
- // this is where we will store the various SQL statements
- // and their performance metrics so we can store them in a db
- const debug = {
- queryObject: queryObject,
- sqls: []
- };
-
- const sql = q.essential.data.sql;
-
- try {
-
- let t = process.hrtime();
-
- // add query results to data.records. If no results are found,
- // add an empty array to data.records
- const records = db.prepare(sql).get(queryObject);
- if (records) {
- data.records = [ records ];
- data['num-of-records'] = 1;
- }
- else {
- data.records = [];
- data['num-of-records'] = 0;
- }
-
- t = process.hrtime(t);
- const p = { sql: sql, took: Utils.timerFormat(t) };
-
- messages.push({ label: 'data', params: p });
- debug.sqls.push(p);
- }
- catch (error) {
- plog.error(error, sql);
- }
-
- data._links = {};
- data._links.self = Utils.makeLink({
- uri: uriZenodeo,
- params: data['search-criteria']
- });
-
- plog.log({
- header: 'ONE QUERY',
- messages: messages,
- queryObject: queryObject
- });
-
- // We are done if no records found
- if (! data['num-of-records']) {
- timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
- }
-
- // more data from beyond the database
- if (queryObject.resource === 'treatments') {
- if (queryObject.xml && queryObject.xml === 'true') {
- data.records[0].xml = getXml(queryObject.treatmentId);
- }
-
- data.taxonStats = getTaxonStats(q, queryObject, debug);
- }
-
- data['related-records'] = getRelatedRecords(q, queryObject, debug);
-
- timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
-};
-
-const getManyRecords = async function(queryObject) {
-
- let timer = process.hrtime();
-
- const messages = [{label: 'queryObject', params: queryObject}];
-
- // data will hold all the query results to be sent back
- const data = {
- 'search-criteria': Utils.makeSearchCriteria(queryObject)
- };
-
- const q = dd2queries(queryObject);
-
- // this is where we will store the various SQL statements
- // and their performance metrics so we can store them in a db
- const debug = {
- queryObject: queryObject,
- sqls: []
- };
-
- const id = queryObject.id ? parseInt(queryObject.id) : 0;
-
- // first find total number of matches
- const countSql = q.essential.count.sql;
-
-
- try {
-
- let t = process.hrtime();
-
- data['num-of-records'] = db.prepare(countSql)
- .get(queryObject)
- .numOfRecords;
-
- t = process.hrtime(t);
- const p = { sql: countSql, took: Utils.timerFormat(t) };
-
- messages.push({ label: 'count', params: p });
- debug.sqls.push(p);
- }
- catch (error) {
- plog.error(error, countSql);
- }
-
- // add a self link to the data
- data._links = {};
- data._links.self = Utils.makeLink({
- uri: uriZenodeo,
- params: data['search-criteria']
- });
-
- // We are done if no records found
- if (! data['num-of-records']) {
- plog.log({
- header: 'MANY QUERIES',
- messages: messages,
- queryObject: queryObject
- });
-
- timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
- }
-
- // get the records
- const dataSql = q.essential.data.sql;
-
- try {
-
- let t = process.hrtime();
-
- data.records = db.prepare(dataSql).all(queryObject) || [];
-
- t = process.hrtime(t);
- const p = { sql: countSql, took: Utils.timerFormat(t) };
-
- messages.push({ label: 'data', params: p });
- debug.sqls.push(p);
- }
- catch (error) {
- plog.error(error, dataSql);
- }
-
- plog.log({
- header: 'MANY QUERIES',
- messages: messages,
- queryObject: queryObject
- });
-
- if (data.records.length > 0) {
-
- data.records.forEach(rec => {
-
- rec._links = {};
- rec._links.self = Utils.makeLink({
- uri: uriZenodeo,
- params: {
- resource: queryObject.resource,
- resourceId: [ queryObject.resourceId, rec[queryObject.resourceId] ]
- }
- });
-
- });
-
- const lastrec = data.records[data.records.length - 1];
- data.nextid = lastrec.id;
-
- }
- else {
- data.nextid = '';
- }
-
- // set some records-specific from and to for the formatted
- // search criteria string
- const num = data.records.length;
- data.from = ((queryObject.page - 1) * queryObject.size) + 1;
- data.to = num < queryObject.size ?
- data.from + num - 1 :
- data.from + queryObject.size - 1;
-
- data.previd = id;
-
- data.prevpage = queryObject.page >= 1 ? queryObject.page - 1 : '';
- data.nextpage = num < queryObject.size ? '' : +queryObject.page + 1;
-
- data._links.prev = Utils.makeLink({
- uri: uriZenodeo,
- params: data['search-criteria'],
- page: data.prevpage
- });
-
- data._links.next = Utils.makeLink({
- uri: uriZenodeo,
- params: data['search-criteria'],
- page: data.nextpage
- });
-
- // finally, get facets and stats, if requested
- const groupedQueries = ['facets', 'stats'];
- groupedQueries.forEach(g => {
- if (g in queryObject && queryObject[g] === 'true') {
- data[g] = getStatsFacets(g, q, queryObject, debug);
- }
- });
-
- // all done
- timer = process.hrtime(timer);
- return dataForDelivery(timer, data, debug);
-};
-
-const getStatsFacets = function(type, q, queryObject, debug) {
-
- const result = {};
- const messages = [];
-
- for (let query in q[type]) {
-
- let t = process.hrtime();
-
- const sql = q[type][query].sql;
-
- try {
- result[query] = db.prepare(sql).all(queryObject);
- }
- catch (error) {
- plog.error(error, sql);
- }
-
- t = process.hrtime(t);
-
- const p = { sql: sql, took: Utils.timerFormat(t) };
- messages.push({ label: query, params: p });
- debug.sqls.push(p);
- }
-
- plog.log({
- header: `${type.toUpperCase()} QUERIES`,
- messages: messages,
- queryObject: queryObject
- });
-
- return result;
-};
-
-const getRelatedRecords = function(q, queryObject, debug) {
-
- const related = {};
- const messages = [];
-
- for (let query in q.related) {
-
- const pk = q.related[query].pk;
- const sql = q.related[query].sql;
-
- let t = process.hrtime();
-
- try {
- related[query] = Utils.halify({
- records: db.prepare(sql).all(queryObject),
- uri: uriZenodeo,
- resource: query,
- id: pk
- });
- }
- catch (error) {
- plog.error(error, sql);
- }
-
- t = process.hrtime(t);
-
- const p = { sql: sql, took: Utils.timerFormat(t) };
- debug.sqls.push(p);
- messages.push({ label: query, params: p });
-
- }
-
- plog.log({
- header: 'ONE RELATED',
- messages: messages,
- queryObject: queryObject
- });
-
- return related;
-};
-
-// const getTaxonStats = function(q, queryObject, debug) {
-
-// const taxonStats = {};
-// const messages = [];
-
-// for (let query in q.taxonStats) {
-
-// const sql = q.taxonStats[query].sql;
-
-// let t = process.hrtime();
-
-// try {
-// taxonStats[query] = db.prepare(sql).get(queryObject).num;
-// }
-// catch (error) {
-// plog.error(error, sql);
-// }
-
-// t = process.hrtime(t);
-
-// const p = { sql: sql, took: Utils.timerFormat(t) };
-// debug.sqls.push(p);
-// messages.push({ label: query, params: p });
-
-// }
-
-// plog.log({
-// header: 'ONE TAXONSTATS',
-// messages: messages,
-// queryObject: queryObject
-// });
-
-// return taxonStats;
-// };
-
-// const getXml = function(treatmentId) {
-// const one = treatmentId.substr(0, 1);
-// const two = treatmentId.substr(0, 2);
-// const thr = treatmentId.substr(0, 3);
-
-// plog.info(`getting the xml for ${treatmentId}`);
-
-// return fs.readFileSync(
-// `data/treatments/${one}/${two}/${thr}/${treatmentId}.xml`,
-// 'utf8'
-// )
-// };
-
-// const formatAuthors = function(authors) {
-// let authorsArr = authors.map(a => { return a.author });
-// const numOfAuthors = authorsArr.length;
-
-// let authorsList = '';
-// if (numOfAuthors === 1) {
-// authorsList = authorsArr[0];
-// }
-// else if (numOfAuthors === 2) {
-// authorsList = authorsArr.join(' and ');
-// }
-// else if (numOfAuthors > 2) {
-// authorsList = authorsArr.slice(0, 2).join(', ');
-// authorsList += ' and ' + authorsArr[numOfAuthors - 1]
-// }
-
-// return authorsList;
-// };
-
-module.exports = { handler, getRecords };
\ No newline at end of file
diff --git a/api/v2/lib/zenodo.js b/api/v2/lib/zenodo.js
index 610afcd..fdac1b1 100644
--- a/api/v2/lib/zenodo.js
+++ b/api/v2/lib/zenodo.js
@@ -93,7 +93,7 @@ const getOneRecord = async function(queryObject) {
const uriRemote = uriZenodo + queryObject[queryObject.resourceId];
const messages = [ {label: 'queryObject', params: queryObject} ];
- const messages = [ {label: 'remote URI', params: uriRemote} ];
+ messages.push({label: 'remote URI', params: uriRemote});
// data will hold all the query results to be sent back
const data = {
diff --git a/api/v2/resources/wpsummary.js b/api/v2/resources/wpsummary.js
index f6c5b81..4b67dd5 100644
--- a/api/v2/resources/wpsummary.js
+++ b/api/v2/resources/wpsummary.js
@@ -1,5 +1,5 @@
const wiki = require('wikijs').default;
-const Schema = require('../schema.js');
+//const Schema = require('../schema.js');
module.exports = {
plugin: {
@@ -32,7 +32,7 @@ module.exports = {
//responseMessages: ResponseMessages
}
},
- validate: Schema.wpsummary,
+ //validate: Schema.wpsummary,
notes: [
'Summary from the Wikipedia page',
]
diff --git a/api/v2/utils.js b/api/v2/utils.js
index 3482680..3a31152 100644
--- a/api/v2/utils.js
+++ b/api/v2/utils.js
@@ -4,10 +4,11 @@ const Wreck = require('@hapi/wreck');
const config = require('config');
const plog = require(config.get('plog'));
-
+const cacheOn = config.get('v2.cache.on');
const Database = require('better-sqlite3');
const dbFacets = new Database(config.get('data.facets'));
const dbTreatments = new Database(config.get('data.treatments'));
+const dbQueries = new Database(config.get('data.queries'));
const facets = {
authors: 'author',
@@ -17,6 +18,93 @@ const facets = {
};
module.exports = {
+
+ dataForDelivery: function(t, data, debug) {
+
+ if (cacheOn) {
+ return data;
+ }
+ else {
+ const report = { msec: t.msr }
+
+ if (process.env.NODE_ENV === 'test') {
+ report.debug = debug;
+ }
+
+ const {queryObject, sqls} = debug;
+ const inserts = sqls.length;
+
+ const s1 = dbQueries.prepare(`INSERT INTO webqueries (qp) VALUES(@qp) ON CONFLICT(qp) DO UPDATE SET count=count+1`);
+
+ const s2 = dbQueries.prepare('SELECT Max(id) AS id FROM webqueries');
+
+ const s3 = dbQueries.prepare(`INSERT INTO sqlqueries (sql) VALUES(@sql) ON CONFLICT(sql) DO NOTHING`);
+
+ const s4 = dbQueries.prepare('SELECT Max(id) AS id FROM sqlqueries');
+
+ const s5 = dbQueries.prepare('INSERT INTO stats (webqueries_id, sqlqueries_id, timeTaken) VALUES (@webqueries_id, @sqlqueries_id, @timeTaken)');
+
+ if (inserts) {
+
+ try {
+ //dbQueries.prepare('BEGIN TRANSACTION').run();
+
+ const qp = JSON.stringify(queryObject);
+ s1.run({qp: qp});
+
+ const webqueries_id = s2.get().id;
+
+ for (let i = 0; i < inserts; i++) {
+
+ const sql = sqls[i].sql.formatUnicorn(queryObject);
+ const t = sqls[i].took;
+
+ s3.run({sql: sql});
+
+ const sqlqueries_id = s4.get().id;
+
+ s5.run({
+ webqueries_id: webqueries_id,
+ sqlqueries_id: sqlqueries_id,
+ timeTaken: t.msr
+ });
+
+ }
+ }
+ catch (error) {
+ console.log(error);
+ }
+
+ }
+
+ return {
+ value: data,
+ cached: null,
+ report: report
+ }
+ }
+
+ },
+
+ // https://stackoverflow.com/a/18234317/183692
+ formatUnicorn: function () {
+
+ let str = this.toString().replace(/@(\w+)/g, "'{\$1}'");
+
+ if (arguments.length) {
+
+ const t = typeof arguments[0];
+ const args = ('string' === t || 'number' === t) ?
+ Array.prototype.slice.call(arguments)
+ : arguments[0];
+
+ for (let key in args) {
+ str = str.replace(new RegExp("\\{" + key + "\\}", "gi"), args[key]);
+ }
+ }
+
+ return str;
+ },
timerFormat: function(t) {
@@ -289,14 +377,14 @@ module.exports = {
makeLink: function({uri, params, page}) {
const qs = Object.entries(params)
- .filter(e => e[0] !== 'resource')
+ .filter(e => e[0] !== 'path')
.map(e => page ? `${e[0]}=${(e[0] === 'page' ? page : e[1])}`
- : e[0] === 'resourceId' ? `${e[1][0]}=${e[1][1]}`
- : `${e[0]}=${e[1]}`)
+ : e[0] === 'resourceId' ? `${e[1].key}=${e[1].val}`
+ : `${e[0]}=${e[1]}`)
.sort()
.join('&');
- return { href: `${uri}/${params.resource}?${qs}` }
+ return { href: `${uri}/${params.path}?${qs}` }
},
/* The incoming queryObject is changed so queries can be made */
@@ -352,14 +440,18 @@ module.exports = {
'limit',
'offset',
//'page',
- 'path',
+ //'path',
'refreshCache',
- //'resource',
+ 'resource',
'resourceId',
//'size',
'stats'
];
+ if (queryObject[queryObject.resourceId]) {
+ exclude.push(...['page', 'size']);
+ }
+
for (let key in queryObject) {
if (! exclude.includes(key)) {
sc[key] = queryObject[key];
diff --git a/config/default.js b/config/default.js
index c0af389..b3cf8db 100644
--- a/config/default.js
+++ b/config/default.js
@@ -32,24 +32,7 @@ module.exports = {
url: 'https://creativecommons.org/publicdomain/zero/1.0/legalcode'
}
},
- // 'cache': {
- // 'path': path.join(cwd, 'cache'),
- // 'v1': {
- // 'path': path.join(cwd, 'cache'),
- // 'name': 'persistent',
- // },
- // 'v2': {
- // 'path': path.join(cwd, 'cache', 'catbox'),
- // 'name': 'catbox',
- // 'on': false
- // }
- //},
- // 'uri': {
- // 'local': 'http://localhost:3000',
- // 'remote': 'https://zenodo.org/api',
- // 'zenodeo': 'http://localhost:3030',
- // 'zenodo': 'https://zenodo.org/api'
- // },
+
'download-program': {
"newTreatmentsDir": path.join(cwd, 'data', 'treatmentsNew'),
"treatmentsListDir": path.join(cwd, 'data'),
@@ -58,6 +41,7 @@ module.exports = {
"downloadListURL": 'http://tb.plazi.org/GgServer/search?&indexName=0&resultFormat=XML&lastModifiedSince='
},
'swaggered-scheme': ['http'],
+
port: 3030,
loglevel: 'INFO',
diff --git a/dataDictionary/dd.js b/dataDictionary/dd.js
index 3c267a2..3121741 100644
--- a/dataDictionary/dd.js
+++ b/dataDictionary/dd.js
@@ -1,6 +1,7 @@
'use strict';
/***********************************************************************
+ *
* Every data-dictionary (dd) element for a resource should
* have the following keys
*
@@ -150,7 +151,7 @@ const commonParams = {
zenodoName : '',
sqlType : 'TEXT NOT NULL',
cheerioElement: '$("document").attr("docId")',
- description : 'The unique ID of the treatment',
+ description : 'The unique ID of the parent treatment (FK)',
queryable : 'equal',
queryString : 'treatmentId',
validation : 'Joi.string().guid().description(`${d}`).optional()',
diff --git a/dataDictionary/figureCitations.js b/dataDictionary/figureCitations.js
index 0f60a14..d1a32c6 100644
--- a/dataDictionary/figureCitations.js
+++ b/dataDictionary/figureCitations.js
@@ -1,17 +1,17 @@
'use strict';
module.exports = [
- {
- plaziName : 'id',
- zenodoName : '',
- sqlType : 'INTEGER PRIMARY KEY',
- cheerioElement: '',
- description : 'pk',
- queryable : '',
- queryString : '',
- validation : '',
- resourceId : false
- },
+ // {
+ // plaziName : 'id',
+ // zenodoName : '',
+ // sqlType : 'INTEGER PRIMARY KEY',
+ // cheerioElement: '',
+ // description : 'pk',
+ // queryable : '',
+ // queryString : '',
+ // validation : '',
+ // resourceId : false
+ // },
{
plaziName : 'figureCitationId',
zenodoName : '',
diff --git a/dataDictionary/materialsCitations.js b/dataDictionary/materialsCitations.js
index 442c97b..2687254 100644
--- a/dataDictionary/materialsCitations.js
+++ b/dataDictionary/materialsCitations.js
@@ -1,17 +1,6 @@
'use strict';
module.exports = [
- {
- plaziName : 'id',
- zenodoName : '',
- sqlType : 'INTEGER PRIMARY KEY',
- cheerioElement: '',
- description : 'pk',
- queryable : '',
- queryString : '',
- validation : '',
- resourceId : false
- },
{
plaziName : 'materialsCitationId',
zenodoName : '',
@@ -226,8 +215,31 @@ module.exports = [
zenodoName : 'geo_lat',
sqlType : 'TEXT',
cheerioElement: '$("materialsCitation").attr("latitude")',
- description : 'Geographic coordinates of the location where the specimen was collected',
- queryable : 'equal',
+ description : `Geographic coordinates of the location where the specimen was collected.
+Since it is unreasonable to expect the user to provide exact lat/lon coordinates, a delta of 0.9
+is used to find all the points contained in the resulting box. For example, if latitude 77 and
+longitude 78 are provided, the two points A and B are located inside the bounding box made from
+submitted coordinates +- a delta of 0.9
+
+ lat: 77.9 lat: 77.9
+ lon: 77.1 lon: 78.9
+ ┌───────────────────────────────────────────────┐
+ │ │
+ │ │
+ │ lat: 77.53333 │
+ │ lon: 78.88333 │
+ │ B │
+ │ │
+ │ │
+ │ lat: 77.2 │
+ │ lon: 78.11667 │
+ │ A │
+ │ │
+ │ │
+ └───────────────────────────────────────────────┘
+ lat: 76.1 lat: 76.1
+ lon: 77.1 lon: 78.9`,
+ queryable : 'between',
queryString : 'latitude',
validation : 'Joi.number().min(-90).max(90).description(`${d}`).optional()',
resourceId : false
@@ -237,8 +249,31 @@ module.exports = [
zenodoName : 'geo_lon',
sqlType : 'TEXT',
cheerioElement: '$("materialsCitation").attr("longitude")',
- description : 'Geographic coordinates of the location where the specimen was collected',
- queryable : 'equal',
+ description : `Geographic coordinates of the location where the specimen was collected.
+ Since it is unreasonable to expect the user to provide exact lat/lon coordinates, a delta of 0.9
+ is used to find all the points contained in the resulting box. For example, if latitude 77 and
+ longitude 78 are provided, the two points A and B are located inside the bounding box made from
+ submitted coordinates +- a delta of 0.9
+
+ lat: 77.9 lat: 77.9
+ lon: 77.1 lon: 78.9
+ ┌───────────────────────────────────────────────┐
+ │ │
+ │ │
+ │ lat: 77.53333 │
+ │ lon: 78.88333 │
+ │ B │
+ │ │
+ │ │
+ │ lat: 77.2 │
+ │ lon: 78.11667 │
+ │ A │
+ │ │
+ │ │
+ └───────────────────────────────────────────────┘
+ lat: 76.1 lat: 76.1
+ lon: 77.1 lon: 78.9`,
+ queryable : 'between',
queryString : 'longitude',
validation : 'Joi.number().min(-180).max(180).description(`${d}`).optional()',
resourceId : false
diff --git a/dataDictionary/treatmentAuthors.js b/dataDictionary/treatmentAuthors.js
index 9ead389..d1bf2a1 100644
--- a/dataDictionary/treatmentAuthors.js
+++ b/dataDictionary/treatmentAuthors.js
@@ -1,17 +1,17 @@
'use strict';
module.exports = [
- {
- plaziName : 'id',
- zenodoName : '',
- sqlType : 'INTEGER PRIMARY KEY',
- cheerioElement: '',
- description : 'pk',
- queryable : '',
- queryString : '',
- validation : '',
- resourceId : false
- },
+ // {
+ // plaziName : 'id',
+ // zenodoName : '',
+ // sqlType : 'INTEGER PRIMARY KEY',
+ // cheerioElement: '',
+ // description : 'pk',
+ // queryable : '',
+ // queryString : '',
+ // validation : '',
+ // resourceId : false
+ // },
{
plaziName : 'treatmentAuthorId',
zenodoName : '',
diff --git a/dataDictionary/treatmentCitations.js b/dataDictionary/treatmentCitations.js
index 10ce3b5..5357c06 100644
--- a/dataDictionary/treatmentCitations.js
+++ b/dataDictionary/treatmentCitations.js
@@ -1,17 +1,17 @@
'use strict';
module.exports = [
- {
- plaziName : 'id',
- zenodoName : '',
- sqlType : 'INTEGER PRIMARY KEY',
- cheerioElement: '',
- description : 'pk',
- queryable : '',
- queryString : '',
- validation : '',
- resourceId : false
- },
+ // {
+ // plaziName : 'id',
+ // zenodoName : '',
+ // sqlType : 'INTEGER PRIMARY KEY',
+ // cheerioElement: '',
+ // description : 'pk',
+ // queryable : '',
+ // queryString : '',
+ // validation : '',
+ // resourceId : false
+ // },
{
plaziName : 'treatmentCitationId',
zenodoName : '',
diff --git a/dataDictionary/treatments.js b/dataDictionary/treatments.js
index 0e6bf0c..a8d15eb 100644
--- a/dataDictionary/treatments.js
+++ b/dataDictionary/treatments.js
@@ -6,7 +6,7 @@ module.exports = [
zenodoName : '',
sqlType : 'INTEGER PRIMARY KEY',
cheerioElement: '',
- description : 'pk',
+ description : 'The primary key (PK) for this table',
queryable : '',
queryString : '',
validation : '',
@@ -23,6 +23,17 @@ module.exports = [
validation : 'Joi.string().guid().description(`${d}`).optional()',
resourceId : true
},
+ {
+ plaziName : 'deleted',
+ zenodoName : '',
+ sqlType : 'INTEGER DEFAULT 0',
+ cheerioElement: '$("document").attr("deleted")',
+ description : 'A boolean that tracks whether or not this resource is considered deleted/revoked, 1 if yes, 0 if no',
+ queryable : '',
+ queryString : '',
+ validation : '',
+ resourceId : false
+ },
{
plaziName : 'treatmentTitle',
zenodoName : 'title',
@@ -269,17 +280,6 @@ module.exports = [
validation : 'Joi.string().description(`${d}`).optional()',
resourceId : false
},
- {
- plaziName : 'deleted',
- zenodoName : '',
- sqlType : 'INTEGER DEFAULT 0',
- cheerioElement: '$("document").attr("deleted")',
- description : 'A boolean that tracks whether or not this resource is considered deleted/revoked, 1 if yes, 0 if no',
- queryable : '',
- queryString : '',
- validation : '',
- resourceId : false
- },
{
plaziName : 'fulltext',
zenodoName : '',
diff --git a/index.js b/index.js
index d09dfc9..d072427 100644
--- a/index.js
+++ b/index.js
@@ -1,11 +1,11 @@
-/*
-Start this program from the command line with `pm2`
+'use strict';
- ~/Nodes/punkish$ NODE_ENV=production pm2 start index.js --name zenodeo
- ~/Nodes/punkish$ NODE_ENV=production pm2 restart zenodeo
-*/
-'use strict';
+// Start this program from the command line with `pm2`
+
+// ~/Nodes/punkish$ NODE_ENV=production pm2 start index.js --name zenodeo
+// ~/Nodes/punkish$ NODE_ENV=production pm2 restart zenodeo
+
/*** hapi 18.4.0 *************************************/
const Hapi = require('@hapi/hapi');
@@ -123,7 +123,13 @@ const start = async () => {
]);
await server.start();
- console.log('Server running on %s', server.info.uri);
+
+ if (process.env.NODE_ENV) {
+ console.log('Server running in %s mode on %s', process.env.NODE_ENV.toUpperCase(), server.info.uri);
+ }
+ else {
+ console.log('Server running in DEVELOPMENT mode on %s', server.info.uri);
+ }
server.events.on('log', (event, tags) => {
diff --git a/lib/plog.js b/lib/plog.js
index 464e9ca..f61249e 100644
--- a/lib/plog.js
+++ b/lib/plog.js
@@ -26,7 +26,7 @@ const prepareMsg = function(param1, param2) {
msg = param2.join('');
}
else if (typeof(param2) === 'object') {
- msg = JSON.stringify(param2);
+ msg = JSON.stringify(param2, null, ' ');
}
else {
msg = param2;
diff --git a/package-lock.json b/package-lock.json
new file mode 100644
index 0000000..e401bd5
--- /dev/null
+++ b/package-lock.json
@@ -0,0 +1,2318 @@
+{
+ "name": "zenodeo",
+ "version": "2.6.0",
+ "lockfileVersion": 1,
+ "requires": true,
+ "dependencies": {
+ "@hapi/accept": {
+ "version": "5.0.1",
+ "resolved": "https://registry.npmjs.org/@hapi/accept/-/accept-5.0.1.tgz",
+ "integrity": "sha512-fMr4d7zLzsAXo28PRRQPXR1o2Wmu+6z+VY1UzDp0iFo13Twj8WePakwXBiqn3E1aAlTpSNzCXdnnQXFhst8h8Q==",
+ "requires": {
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/address": {
+ "version": "4.0.1",
+ "resolved": "https://registry.npmjs.org/@hapi/address/-/address-4.0.1.tgz",
+ "integrity": "sha512-0oEP5UiyV4f3d6cBL8F3Z5S7iWSX39Knnl0lY8i+6gfmmIBj44JCBNtcMgwyS+5v7j3VYavNay0NFHDS+UGQcw==",
+ "requires": {
+ "@hapi/hoek": "^9.0.0"
+ }
+ },
+ "@hapi/ammo": {
+ "version": "5.0.1",
+ "resolved": "https://registry.npmjs.org/@hapi/ammo/-/ammo-5.0.1.tgz",
+ "integrity": "sha512-FbCNwcTbnQP4VYYhLNGZmA76xb2aHg9AMPiy18NZyWMG310P5KdFGyA9v2rm5ujrIny77dEEIkMOwl0Xv+fSSA==",
+ "requires": {
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/b64": {
+ "version": "5.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/b64/-/b64-5.0.0.tgz",
+ "integrity": "sha512-ngu0tSEmrezoiIaNGG6rRvKOUkUuDdf4XTPnONHGYfSGRmDqPZX5oJL6HAdKTo1UQHECbdB4OzhWrfgVppjHUw==",
+ "requires": {
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/boom": {
+ "version": "9.1.0",
+ "resolved": "https://registry.npmjs.org/@hapi/boom/-/boom-9.1.0.tgz",
+ "integrity": "sha512-4nZmpp4tXbm162LaZT45P7F7sgiem8dwAh2vHWT6XX24dozNjGMg6BvKCRvtCUcmcXqeMIUqWN8Rc5X8yKuROQ==",
+ "requires": {
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/bounce": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/bounce/-/bounce-2.0.0.tgz",
+ "integrity": "sha512-JesW92uyzOOyuzJKjoLHM1ThiOvHPOLDHw01YV8yh5nCso7sDwJho1h0Ad2N+E62bZyz46TG3xhAi/78Gsct6A==",
+ "requires": {
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/bourne": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/bourne/-/bourne-2.0.0.tgz",
+ "integrity": "sha512-WEezM1FWztfbzqIUbsDzFRVMxSoLy3HugVcux6KDDtTqzPsLE8NDRHfXvev66aH1i2oOKKar3/XDjbvh/OUBdg=="
+ },
+ "@hapi/call": {
+ "version": "8.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/call/-/call-8.0.0.tgz",
+ "integrity": "sha512-4xHIWWqaIDQlVU88XAnomACSoC7iWUfaLfdu2T7I0y+HFFwZUrKKGfwn6ik4kwKsJRMnOliG3UXsF8V/94+Lkg==",
+ "requires": {
+ "@hapi/address": "4.x.x",
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/catbox": {
+ "version": "11.1.0",
+ "resolved": "https://registry.npmjs.org/@hapi/catbox/-/catbox-11.1.0.tgz",
+ "integrity": "sha512-FDEjfn26RZRyOEPeZdaAL7dRiAK5FOGuwTnTw0gxK30csAlKeOHsEnoIxnLIXx7QOS17eUaOk6+MiweWQM6Keg==",
+ "requires": {
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x",
+ "@hapi/joi": "17.x.x",
+ "@hapi/podium": "4.x.x"
+ }
+ },
+ "@hapi/catbox-memory": {
+ "version": "5.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/catbox-memory/-/catbox-memory-5.0.0.tgz",
+ "integrity": "sha512-ByuxVJPHNaXwLzbBv4GdTr6ccpe1nG+AfYt+8ftDWEJY7EWBWzD+Klhy5oPTDGzU26pNUh1e7fcYI1ILZRxAXQ==",
+ "requires": {
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x"
+ }
+ },
+ "@hapi/content": {
+ "version": "5.0.2",
+ "resolved": "https://registry.npmjs.org/@hapi/content/-/content-5.0.2.tgz",
+ "integrity": "sha512-mre4dl1ygd4ZyOH3tiYBrOUBzV7Pu/EOs8VLGf58vtOEECWed8Uuw6B4iR9AN/8uQt42tB04qpVaMyoMQh0oMw==",
+ "requires": {
+ "@hapi/boom": "9.x.x"
+ }
+ },
+ "@hapi/cryptiles": {
+ "version": "5.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/cryptiles/-/cryptiles-5.0.0.tgz",
+ "integrity": "sha512-Yq43ti9N51Z7jbm0Q7YVCcofA+4Gh5wsBX/jZ++Z+FM8GYfBQ1WmI9ufZSL+BVX8vRxzDkdQ2fKoG6cxOQlnVQ==",
+ "requires": {
+ "@hapi/boom": "9.x.x"
+ }
+ },
+ "@hapi/file": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/file/-/file-2.0.0.tgz",
+ "integrity": "sha512-WSrlgpvEqgPWkI18kkGELEZfXr0bYLtr16iIN4Krh9sRnzBZN6nnWxHFxtsnP684wueEySBbXPDg/WfA9xJdBQ=="
+ },
+ "@hapi/formula": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/formula/-/formula-2.0.0.tgz",
+ "integrity": "sha512-V87P8fv7PI0LH7LiVi8Lkf3x+KCO7pQozXRssAHNXXL9L1K+uyu4XypLXwxqVDKgyQai6qj3/KteNlrqDx4W5A=="
+ },
+ "@hapi/hapi": {
+ "version": "19.1.1",
+ "resolved": "https://registry.npmjs.org/@hapi/hapi/-/hapi-19.1.1.tgz",
+ "integrity": "sha512-rpQzSs0XsHSF7usM4qdJJ0Bcmhs9stWhUW3OiamW33bw4qL8q3uEgUKB9KH8ODmluCAkkXOQ0X0Dh9t94E5VIw==",
+ "requires": {
+ "@hapi/accept": "^5.0.1",
+ "@hapi/ammo": "^5.0.1",
+ "@hapi/boom": "9.x.x",
+ "@hapi/bounce": "2.x.x",
+ "@hapi/call": "8.x.x",
+ "@hapi/catbox": "11.x.x",
+ "@hapi/catbox-memory": "5.x.x",
+ "@hapi/heavy": "7.x.x",
+ "@hapi/hoek": "9.x.x",
+ "@hapi/joi": "17.x.x",
+ "@hapi/mimos": "5.x.x",
+ "@hapi/podium": "4.x.x",
+ "@hapi/shot": "5.x.x",
+ "@hapi/somever": "3.x.x",
+ "@hapi/statehood": "^7.0.2",
+ "@hapi/subtext": "^7.0.3",
+ "@hapi/teamwork": "4.x.x",
+ "@hapi/topo": "5.x.x"
+ }
+ },
+ "@hapi/heavy": {
+ "version": "7.0.0",
+ "resolved": "https://registry.npmjs.org/@hapi/heavy/-/heavy-7.0.0.tgz",
+ "integrity": "sha512-n/nheUG6zNleWkjY+3fzV3VJIAumUCaa/WoTmurjqlYY5JgC5ZKOpvP7tWi8rXmKZhbcXgjH3fHFoM55LoBT7g==",
+ "requires": {
+ "@hapi/boom": "9.x.x",
+ "@hapi/hoek": "9.x.x",
+ "@hapi/joi": "17.x.x"
+ }
+ },
+ "@hapi/hoek": {
+ "version": "9.0.4",
+ "resolved": "https://registry.npmjs.org/@hapi/hoek/-/hoek-9.0.4.tgz",
+ "integrity": "sha512-EwaJS7RjoXUZ2cXXKZZxZqieGtc7RbvQhUy8FwDoMQtxWVi14tFjeFCYPZAM1mBCpOpiBpyaZbb9NeHc7eGKgw=="
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+ },
+ "which-pm-runs": {
+ "version": "1.0.0",
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+ "integrity": "sha1-Zws6+8VS4LVd9rd4DKdGFfI60cs="
+ },
+ "wide-align": {
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+ "requires": {
+ "string-width": "^1.0.2 || 2"
+ }
+ },
+ "wikijs": {
+ "version": "5.5.1",
+ "resolved": "https://registry.npmjs.org/wikijs/-/wikijs-5.5.1.tgz",
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+ "requires": {
+ "cross-fetch": "^3.0.2",
+ "infobox-parser": "3.3.1"
+ }
+ },
+ "wordwrap": {
+ "version": "1.0.0",
+ "resolved": "https://registry.npmjs.org/wordwrap/-/wordwrap-1.0.0.tgz",
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+ "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8="
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+ },
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+ },
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+ "version": "2.10.0",
+ "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz",
+ "integrity": "sha1-x+sXyT4RLLEIb6bY5R+wZnt5pfk=",
+ "requires": {
+ "buffer-crc32": "~0.2.3",
+ "fd-slicer": "~1.1.0"
+ }
+ },
+ "z-schema": {
+ "version": "3.25.1",
+ "resolved": "https://registry.npmjs.org/z-schema/-/z-schema-3.25.1.tgz",
+ "integrity": "sha512-7tDlwhrBG+oYFdXNOjILSurpfQyuVgkRe3hB2q8TEssamDHB7BbLWYkYO98nTn0FibfdFroFKDjndbgufAgS/Q==",
+ "requires": {
+ "commander": "^2.7.1",
+ "core-js": "^2.5.7",
+ "lodash.get": "^4.0.0",
+ "lodash.isequal": "^4.0.0",
+ "validator": "^10.0.0"
+ }
+ }
+ }
+}
diff --git a/package.json b/package.json
index 2cb084c..1b30458 100644
--- a/package.json
+++ b/package.json
@@ -1,44 +1,38 @@
{
"name": "zenodeo",
- "version": "2.5.0",
+ "version": "2.6.0",
"description": "`nodejs` interface to the Zenodo/BLR community collection",
"main": "index.js",
"repository": "https://github.com/punkish/zenodeo",
"author": "Puneet Kishor",
"license": "CC0-1.0",
"dependencies": {
- "@hapi/boom": "^7.4.11",
- "@hapi/catbox": "^10.2.3",
- "@hapi/hapi": "^18.4.0",
- "@hapi/inert": "^5.2.2",
- "@hapi/joi": "^16.1.8",
- "@hapi/vision": "^5.5.4",
- "@hapi/wreck": "^15.1.0",
- "better-sqlite3": "^5.4.3",
+ "@hapi/boom": "^9.1.0",
+ "@hapi/catbox": "^11.1.0",
+ "@hapi/hapi": "^19.1.1",
+ "@hapi/inert": "^6.0.1",
+ "@hapi/joi": "^17.1.1",
+ "@hapi/vision": "^6.0.0",
+ "@hapi/wreck": "^17.0.0",
+ "better-sqlite3": "^6.0.1",
"blipp": "^4.0.1",
"catbox-disk": "^3.0.2",
- "chalk": "^3.0.0",
+ "chalk": "^4.0.0",
"chance": "^1.1.3",
"cheerio": "^1.0.0-rc.3",
"config": "^3.2.4",
"csvjson": "^5.1.0",
"debug": "^4.1.1",
"download": "^7.1.0",
- "handlebars": "^4.5.3",
- "hapi-swagger": "^11.0.1",
- "minimist": "^1.2.0",
- "mkdirp": "^0.5.1",
+ "handlebars": "^4.7.6",
+ "hapi-swagger": "^13.0.0",
+ "minimist": "^1.2.5",
+ "mkdirp": "^1.0.4",
"nodemailer": "^6.4.0",
"persistent-cache": "^1.1.1",
"picolog": "^1.0.4",
"progress": "^2.0.3",
"wikijs": "^5.5.1"
},
- "devDependencies": {
- "chai": "^4.2.0",
- "mocha": "^7.1.0"
- },
- "scripts": {
- "test": "mocha"
- }
+ "devDependencies": {}
}
diff --git a/resources/deefault.js b/resources/deefault.js
deleted file mode 100644
index b32576a..0000000
--- a/resources/deefault.js
+++ /dev/null
@@ -1,71 +0,0 @@
-// default route, redirects to the most recent API
-const debug = require('debug')('default');
-
-const deefault = {
- method: 'GET',
- path: '/{param*}',
- config: {
- description: "default route",
- tags: ['private']
- },
- handler: function(request, h) {
-
- //debug(request.url);
-
- let uri = '';
-
- const APIs = ['v1', 'v2'];
- // const collections = [
- // 'v1',
- // 'v2',
- // 'records',
- // 'communities'
- // ];
-
- // const singles = [
- // 'record'
- // ];
-
-
- if (request.params.param) {
-
- let params = request.params.param.split('/');
-
- //Debug(params);
-
- // add latest version if there is no version
- if ((params[0] !== 'v1') && (params[0] !== 'v2')) {
- params.unshift(`v${APIs.length}`);
- }
-
- //Debug(params);
-
- uri = params.join('/');
-
- // add a trailing slash if requesting a collection
- //
-
- // add the query params
- if (request.query) {
- const qry = [];
- for (let q in request.query) {
- qry.push(`${q}=${request.query[q]}`);
- }
-
- if (qry.length) {
- uri += '?' + qry.join('&');
- }
- }
- }
-
- else {
- uri = `/v${APIs.length}/`;
- }
-
-
- //debug(`uri: ${uri}`);
- return h.redirect(uri);
- }
-};
-
-module.exports = deefault;
\ No newline at end of file
diff --git a/resources/releases.js b/resources/releases.js
index 6493fb4..7574704 100644
--- a/resources/releases.js
+++ b/resources/releases.js
@@ -1,31 +1,163 @@
-const about = {
+const notes = {
method: 'GET',
- path: '/releases',
+ path: '/notes',
config: {
- description: "releases",
+ description: "release notes",
tags: ['zenodeo'],
validate: {},
notes: [
- 'root',
+ 'release notes',
]
},
handler: function(request, h) {
+
+ const data = getRecords();
+
return h.view(
// content template
- 'releases',
+ 'notes',
// data
- null,
+ data,
- // layout
{ layout: 'main' }
);
}
};
+
+const getRecords = function() {
+
+ return {
+ notes: [
+ {
+ summary: 'version 2.6.0',
+ detail: `
+
+ - Major refactoring resulting in a lot less code and a lot more comments.
+ - A brand new data dictionary has been implemented.
-
+
- A move to configuration over code philosophy. For example, the data dictionary generates the schema that is used to validate input queries and it generates the SQL queries that query the database
+ - Executed queries along with the performance metrics are now stored in a separate database along with the count of how many times they've been made. Besides providing an insight in the performance bottlenecks, this may also provide an insight into the trends of the data being queried by the users.
+
`
+ },
+
+ {
+ summary: 'version 2.5.0',
+ detail: `
+
+ - All columns in all tables are now queryable
+ - LIKE searches are case-insensitive and non-exact
+ - 'test' instance now returns debug information along with performance metrics
+
`
+ },
+
+ {
+ summary: 'version 2.0.1',
+ detail: `
+ `
+ },
+
+ {
+ summary: 'version 1.6.1',
+ detail: `
+
+ - async calls to Zenodo are now really async, speeding up the queries significantly
+ - A refreshCache switch allows force overwriting results in in cache
+
`
+ },
+
+ {
+ summary: 'version 1.5.2',
+ detail: `
+
+ - Better image layout in examples + link to parent record on Zenodo
+
`
+ },
+
+ {
+ summary: 'version 1.5.1',
+ detail: `
+
+ - Added a persistent cache
+ - Made the examples page more elaborate
+
`
+ },
+
+ {
+ summary: 'version 1.0.1',
+ detail: `
+
+ - Initial version with in-memory cache
+
`
+ }
+
+
+ ]
+ };
+}
-module.exports = about;
\ No newline at end of file
+module.exports = notes;
\ No newline at end of file
diff --git a/views/releases.html b/views/releases.html
index 369a160..b1324cd 100644
--- a/views/releases.html
+++ b/views/releases.html
@@ -1,101 +1,12 @@
- Releases
-
- To upgrade the `Zenodeo` API to the latest version, run the following commands
-
-$ git pull
-$ yarn
-
-
-
- version 2.0.1
-
-
-
+ Release Notes
+ {{#notes}}
- version 1.6.1
-
-
- - async calls to Zenodo are now really async, speeding up the queries significantly
- - a refreshCache switch allows force overwriting results in in cache
-
-
-
-
- version 1.5.2
-
-
- - Better image layout in examples + link to parent record on Zenodo
-
-
-
-
- version 1.5.1
-
-
- - Added a persistent cache
- - Made the examples page more elaborate
-
-
-
-
- version 1.0.1
-
-
- - Initial version with in-memory cache
-
+
+ {{summary}}
+ {{{detail}}}
+
+ {{/notes}}
\ No newline at end of file
diff --git a/yarn.lock b/yarn.lock
deleted file mode 100644
index cd5f23e..0000000
--- a/yarn.lock
+++ /dev/null
@@ -1,2454 +0,0 @@
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-# yarn lockfile v1
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