Merge pull request #22 from psychelzh/20-release-cpmr-010

Author: psychelzh

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: cpmr
 Title: Connectome Predictive Modelling in R
-Version: 0.0.9.9000
+Version: 0.1.0
 Authors@R:
     person("Liang", "Zhang", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-9041-1150"))

NEWS.md

@@ -1,9 +1,9 @@
-# cpmr (development version)
+# cpmr 0.1.0
 
 ## New features
 
-* Added `summary()` method to summarize the results of the CPM analysis.
-* Added `tidy()` method to tidy the results of the CPM analysis.
+* Added `summary()` method to summarize the results of the CPM analysis (#8).
+* Added `tidy()` method to tidy the results of the CPM analysis (#10).
 * Support `na_action` argument in `cpm()` function to handle missing values in the input data (#2).
 
 ## Enhancements

R/cpm.R

@@ -133,10 +133,10 @@ cpm <- function(conmat, behav, ...,
     exclude = Reduce(
       function(x, y) intersect(x, y),
       list(
-        which(complete.cases(conmat)),
-        which(complete.cases(behav)),
+        which(stats::complete.cases(conmat)),
+        which(stats::complete.cases(behav)),
         if (!is.null(confounds)) {
-          which(complete.cases(confounds))
+          which(stats::complete.cases(confounds))
         } else {
           seq_along(behav)
         }
@@ -225,7 +225,7 @@ print.cpm <- function(x, ...) {
   cat("  Call: ")
   print(x$call)
   cat(sprintf("  Number of observations: %d\n", length(x$real)))
-  cat(sprintf("    Complete cases: %d\n", sum(complete.cases(x$pred))))
+  cat(sprintf("    Complete cases: %d\n", sum(stats::complete.cases(x$pred))))
   if (!is.null(x$edges)) {
     cat(sprintf("  Number of edges: %d\n", dim(x$edges)[1]))
   } else {

R/tidy.R

@@ -7,7 +7,7 @@ generics::tidy
 #' @param x A `cpm` object.
 #' @param ... Additional arguments passed to `summary()`.
 #' @param component A character vector indicating the component to tidy.
-#' @return A [tibble][tibble-package] with columns storing parameters of the
+#' @return A [tibble][tibble::tibble-package] with columns storing parameters of the
 #'   [cpm()] object and further columns depending on the `component` argument:
 #'
 #'   For `component = "performance"`:

cran-comments.md

@@ -1,15 +1,3 @@
 ## R CMD check results
 
-0 errors | 0 warnings | 1 note
-
-* This is a new release.
-
-The NOTE is as follows:
-
-```
-❯ checking for non-standard things in the check directory ... NOTE
-  Found the following files/directories:
-    ''NULL''
-```
-
-As noted in [this issue](https://github.com/r-hub/rhub/issues/560), this is a known issue with the `rhub` package and can be safely ignored.
+Use `devtools::check_win_devel()` shows no errors, warnings and notes.