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publications.html
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<!DOCTYPE HTML>
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<title>Polio nanopore publications</title>
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<h1>Poliovirus Sequencing Consortium Publications</h1>
<span class="image main"><img src="images/books.jpg" alt="" /></span>
<p>Shaw AG, Majumdar M, Troman C, Toole Á, Benny B, Abraham D,
Praharaj I, Kang G, Sharif S, Alam MM, Shaukat S, Angez M, Khurshid A, Mahmood
N, Arshad Y, Rehman L, Mujtaba G, Akthar R, Salman M, Klapsa D, Hajarha Y,
Asghar H, Bandyopadhyay A, Rambaut A, Martin J, Grassly N. 2020. Rapid and
sensitive direct detection and identification of poliovirus from stool and
environmental surveillance samples using nanopore sequencing. <i>J Clin
Microbiol</i> <b>58</b>: e00920. <a
href="https://pubmed.ncbi.nlm.nih.gov/32611795/">https://pubmed.ncbi.nlm.nih.gov/32611795/</a>
</p>
<p>Shaw AG, Cooper LV, Gumede N, Bandyopadhyay AS, Grassly NC,
Blake IM. 2021. Time taken to detect and respond to polio outbreaks in Africa
and the potential impact of direct molecular detection and nanopore sequencing.
<i>J Infect Dis</i> <b>226</b>: 453-62. <a
href="https://pubmed.ncbi.nlm.nih.gov/34623444/">https://pubmed.ncbi.nlm.nih.gov/34623444/</a>
</p>
<p>Klapsa D, Wilton T, Zealand A, Bujaki E, Saxentoff E, Troman
C, Shaw AG, Tedcastle A, Majumdar M, Mate R, Akello JO, Huseynov S, Zeb A,
Zambon M, Bell A, Hagan J, Wade MJ, Ramsay M, Grassly NC, Saliba V, Martin J.
2022. Sustained detection of type 2 poliovirus in London sewage between February
and July, 2022, by enhanced environmental surveillance. <i>Lancet</i> <b>400</b>:
1531-8. <a href="https://pubmed.ncbi.nlm.nih.gov/36243024/">https://pubmed.ncbi.nlm.nih.gov/36243024/</a>
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<p>Akello J, Bujaki E, Shaw A, Khurshid A, Arshad Y, Troman C, Majumdar M, O'Toole Á, Rambaut A, Alam MM, Martin J,
Grassly N. 2023. Comparison of eleven RNA extraction methods for poliovirus direct molecular detection in stool samples.
<i>Microbiology Spectrum</i>
<a href="https://doi.org/10.1128/spectrum.04252-22">https://doi.org/10.1128/spectrum.04252-22</a>
</p>
<p>Shaw AG, Mampuela TK, Lofiko EL, Pratt C, Troman C, Bujaki E, O’Toole Á,
Akello JO, Aziza AA, Lusamaki EK, Makangara JC, Akonga M, Lay Y, Nsunda B,
White B, Jorgensen D, Pukuta E, Riziki Y, Rankin KE, Rambaut A, Ahuka-Mundeke S,
Muyembe J-J, Martin J, Grassly NC, Mbala-Kingebeni P. 2023. Sensitive poliovirus detection
using nested PCR and nanopore sequencing: a prospective validation study. <i>Nature Microbiology</i>
<a href="https://www.nature.com/articles/s41564-023-01453-4">https://www.nature.com/articles/s41564-023-01453-4</a>
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