@@ -149,49 +149,6 @@ export default new Vuex.Store({
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} ,
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] ,
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} ,
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- {
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- stepName : "reorient" ,
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- disabled : "never" ,
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- services : [
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- {
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- tooltip : "reorient reads based on specified primer sequences" ,
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- scriptName : "reorient_paired_end_reads.sh" ,
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- imageName : "pipecraft/reorient:1" ,
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- serviceName : "reorient" ,
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- selected : false ,
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- showExtra : false ,
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- extraInputs : [ ] ,
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- Inputs : [
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- {
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- name : "mismatches" ,
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- value : 1 ,
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- disabled : "never" ,
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- tooltip : "allowed mismatches in the primer search" ,
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- type : "numeric" ,
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- rules : [ ( v ) => v >= 0 || "ERROR: specify values >= 0" ] ,
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- } ,
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- {
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- name : "forward_primers" ,
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- value : [ ] ,
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- disabled : "never" ,
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- tooltip : "specify forward primer (5'-3'); add up to 13 primers" ,
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- type : "chip" ,
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- iupac : true ,
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- rules : [ ( v ) => v . length <= 13 || "TOO MANY PRIMERS" ] ,
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- } ,
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- {
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- name : "reverse_primers" ,
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- value : [ ] ,
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- disabled : "never" ,
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- tooltip : "specify reverse primer (3'-5'); add up to 13 primers" ,
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- type : "chip" ,
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- iupac : true ,
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- rules : [ ( v ) => v . length <= 13 || "TOO MANY PRIMERS" ] ,
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- } ,
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- ] ,
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- } ,
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- ] ,
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- } ,
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{
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stepName : "cut primers" ,
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disabled : "never" ,
@@ -2431,6 +2388,43 @@ export default new Vuex.Store({
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stepName : "utilities" ,
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disabled : "never" ,
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services : [
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+ {
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+ tooltip : "reorient reads based on specified primer sequences" ,
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+ scriptName : "reorient_paired_end_reads.sh" ,
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+ imageName : "pipecraft/reorient:1" ,
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+ serviceName : "reorient" ,
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+ selected : false ,
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+ showExtra : false ,
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+ extraInputs : [ ] ,
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+ Inputs : [
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+ {
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+ name : "mismatches" ,
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+ value : 1 ,
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+ disabled : "never" ,
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+ tooltip : "allowed mismatches in the primer search" ,
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+ type : "numeric" ,
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+ rules : [ ( v ) => v >= 0 || "ERROR: specify values >= 0" ] ,
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+ } ,
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+ {
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+ name : "forward_primers" ,
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+ value : [ ] ,
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+ disabled : "never" ,
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+ tooltip : "specify forward primer (5'-3'); add up to 13 primers" ,
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+ type : "chip" ,
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+ iupac : true ,
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+ rules : [ ( v ) => v . length <= 13 || "TOO MANY PRIMERS" ] ,
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+ } ,
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+ {
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+ name : "reverse_primers" ,
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+ value : [ ] ,
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+ disabled : "never" ,
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+ tooltip : "specify reverse primer (3'-5'); add up to 13 primers" ,
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+ type : "chip" ,
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+ iupac : true ,
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+ rules : [ ( v ) => v . length <= 13 || "TOO MANY PRIMERS" ] ,
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+ } ,
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+ ] ,
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+ } ,
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{
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tooltip :
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"sequence file [fasta(.gz)/fastq(.gz)] statistics per file (number of seqs, min length, average length, max length)" ,
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