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reorient under utilities
1 parent e392d1e commit c981bcb

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2 files changed

+43
-49
lines changed

2 files changed

+43
-49
lines changed

src/store/index.js

Lines changed: 37 additions & 43 deletions
Original file line numberDiff line numberDiff line change
@@ -149,49 +149,6 @@ export default new Vuex.Store({
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},
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],
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},
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{
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stepName: "reorient",
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disabled: "never",
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services: [
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{
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tooltip: "reorient reads based on specified primer sequences",
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scriptName: "reorient_paired_end_reads.sh",
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imageName: "pipecraft/reorient:1",
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serviceName: "reorient",
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selected: false,
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showExtra: false,
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extraInputs: [],
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Inputs: [
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{
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name: "mismatches",
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value: 1,
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disabled: "never",
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tooltip: "allowed mismatches in the primer search",
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type: "numeric",
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rules: [(v) => v >= 0 || "ERROR: specify values >= 0"],
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},
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{
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name: "forward_primers",
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value: [],
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disabled: "never",
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tooltip: "specify forward primer (5'-3'); add up to 13 primers",
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type: "chip",
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iupac: true,
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rules: [(v) => v.length <= 13 || "TOO MANY PRIMERS"],
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},
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{
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name: "reverse_primers",
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value: [],
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disabled: "never",
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tooltip: "specify reverse primer (3'-5'); add up to 13 primers",
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type: "chip",
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iupac: true,
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rules: [(v) => v.length <= 13 || "TOO MANY PRIMERS"],
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},
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],
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},
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],
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},
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{
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stepName: "cut primers",
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disabled: "never",
@@ -2431,6 +2388,43 @@ export default new Vuex.Store({
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stepName: "utilities",
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disabled: "never",
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services: [
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{
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tooltip: "reorient reads based on specified primer sequences",
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scriptName: "reorient_paired_end_reads.sh",
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imageName: "pipecraft/reorient:1",
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serviceName: "reorient",
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selected: false,
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showExtra: false,
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extraInputs: [],
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Inputs: [
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{
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name: "mismatches",
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value: 1,
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disabled: "never",
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tooltip: "allowed mismatches in the primer search",
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type: "numeric",
2406+
rules: [(v) => v >= 0 || "ERROR: specify values >= 0"],
2407+
},
2408+
{
2409+
name: "forward_primers",
2410+
value: [],
2411+
disabled: "never",
2412+
tooltip: "specify forward primer (5'-3'); add up to 13 primers",
2413+
type: "chip",
2414+
iupac: true,
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rules: [(v) => v.length <= 13 || "TOO MANY PRIMERS"],
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},
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{
2418+
name: "reverse_primers",
2419+
value: [],
2420+
disabled: "never",
2421+
tooltip: "specify reverse primer (3'-5'); add up to 13 primers",
2422+
type: "chip",
2423+
iupac: true,
2424+
rules: [(v) => v.length <= 13 || "TOO MANY PRIMERS"],
2425+
},
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],
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},
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{
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tooltip:
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"sequence file [fasta(.gz)/fastq(.gz)] statistics per file (number of seqs, min length, average length, max length)",

vue.config.js

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -8,12 +8,12 @@ module.exports = {
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publish: ["github"],
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win: {
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icon: "build/icon.ico",
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target: [
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{
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target: "portable",
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arch: ["x64"]
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}
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]
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// target: [
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// {
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// target: "portable",
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// arch: ["x64"]
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// }
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// ]
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},
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linux: {
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target: "AppImage",

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