From 68954cc6b87b54201a4580e5391a094e294bfbca Mon Sep 17 00:00:00 2001
From: philchalmers <rphilip.chalmers@gmail.com>
Date: Fri, 7 Feb 2025 10:42:38 -0500
Subject: [PATCH] drop burn-in budget slightly

---
 R/SimSolve.R    | 6 +++---
 SimDesign.Rproj | 1 -
 man/SimSolve.Rd | 6 +++---
 3 files changed, 6 insertions(+), 7 deletions(-)

diff --git a/R/SimSolve.R b/R/SimSolve.R
index c697c6ae..65dfe696 100644
--- a/R/SimSolve.R
+++ b/R/SimSolve.R
@@ -39,13 +39,13 @@
 #'   indicating the number of replication to
 #'   use for each design condition per PBA iteration. By default the input is a
 #'   \code{list} with the arguments \code{burnin.iter = 15L}, specifying the number
-#'   of burn-in iterations to used, \code{burnin.reps = 100L} to indicate how many
+#'   of burn-in iterations to used, \code{burnin.reps = 50L} to indicate how many
 #'   replications to use in each burn-in iteration, \code{max.reps = 500L} to
 #'   prevent the replications from increasing higher than this number,
 #'   \code{min.total.reps = 9000L} to avoid termination when very few replications
 #'   have been explored (lower bound of the replication budget),
 #'   and \code{increase.by = 10L} to indicate how many replications to increase
-#'   after the burn-in stage. Default can overwritten by explicit definition (e.g.,
+#'   per iteration after the burn-in stage. Default can overwritten by explicit definition (e.g.,
 #'   \code{replications = list(increase.by = 25L)}).
 #'
 #'   Vector inputs can specify the exact replications  for each respective
@@ -463,7 +463,7 @@
 #'
 #' }
 SimSolve <- function(design, interval, b, generate, analyse, summarise,
-                     replications = list(burnin.iter = 15L, burnin.reps = 100L,
+                     replications = list(burnin.iter = 15L, burnin.reps = 50L,
                                          max.reps = 500L, min.total.reps = 9000L,
                                          increase.by = 10L),
                      integer = TRUE, formula = y ~ poly(x, 2), family = 'binomial',
diff --git a/SimDesign.Rproj b/SimDesign.Rproj
index ddae7877..081c716d 100644
--- a/SimDesign.Rproj
+++ b/SimDesign.Rproj
@@ -1,5 +1,4 @@
 Version: 1.0
-ProjectId: ce66594f-c677-4915-8d16-61eeb96d879c
 
 RestoreWorkspace: No
 SaveWorkspace: No
diff --git a/man/SimSolve.Rd b/man/SimSolve.Rd
index c71d8274..8f5ea9b7 100644
--- a/man/SimSolve.Rd
+++ b/man/SimSolve.Rd
@@ -13,7 +13,7 @@ SimSolve(
   generate,
   analyse,
   summarise,
-  replications = list(burnin.iter = 15L, burnin.reps = 100L, max.reps = 500L,
+  replications = list(burnin.iter = 15L, burnin.reps = 50L, max.reps = 500L,
     min.total.reps = 9000L, increase.by = 10L),
   integer = TRUE,
   formula = y ~ poly(x, 2),
@@ -71,13 +71,13 @@ see \code{\link{runSimulation}}}
   indicating the number of replication to
   use for each design condition per PBA iteration. By default the input is a
   \code{list} with the arguments \code{burnin.iter = 15L}, specifying the number
-  of burn-in iterations to used, \code{burnin.reps = 100L} to indicate how many
+  of burn-in iterations to used, \code{burnin.reps = 50L} to indicate how many
   replications to use in each burn-in iteration, \code{max.reps = 500L} to
   prevent the replications from increasing higher than this number,
   \code{min.total.reps = 9000L} to avoid termination when very few replications
   have been explored (lower bound of the replication budget),
   and \code{increase.by = 10L} to indicate how many replications to increase
-  after the burn-in stage. Default can overwritten by explicit definition (e.g.,
+  per iteration after the burn-in stage. Default can overwritten by explicit definition (e.g.,
   \code{replications = list(increase.by = 25L)}).
 
   Vector inputs can specify the exact replications  for each respective